Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11p06
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    25   0.64 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.1  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          24   1.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.6  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   5.9  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 287 GDRITRLGIALPGWGSHYPDGGRITRIGIVVPWYIGSEICDPS 415
           GD I  L + LPG G  Y +G     IG+   W+   E  DP+
Sbjct: 367 GDEIVMLTLTLPGIGVVY-NG---DEIGMEDRWFTYQETVDPA 405



 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 227 GDRITRLGIALPGWGSHYPAGDRI 298
           GD I  L + LPG G  Y  GD I
Sbjct: 367 GDEIVMLTLTLPGIGVVY-NGDEI 389



 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 247 GDRITRLGIALPGWGSHYPAGDRI 318
           GD I  L + LPG G  Y  GD I
Sbjct: 367 GDEIVMLTLTLPGIGVVY-NGDEI 389


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -3

Query: 383 RVLRSLSA*CDPHPGN--AIPSRVMRSPA 303
           R+  + S+ CDP PGN   I SR +  PA
Sbjct: 70  RLYPAFSSSCDPVPGNLEQIGSRPLHPPA 98


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
 Frame = +2

Query: 296 ITRLGIALP---GWGSHYPDGGRIT 361
           I  L ++LP   GWGS+ P+ G ++
Sbjct: 24  IYALSLSLPPLFGWGSYGPEAGNVS 48


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -2

Query: 441 QPHS-APGCREGSQISLPIYQGTTIPIRVMRPPSG*CDPQPGNAIPSRVMRSPA 283
           QP S APG +     S    Q  + P     PP G     P +  PS++M SPA
Sbjct: 15  QPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPA 68


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +1

Query: 226 WGSHYPAGDRITRLGIALPGWGSHYPAG 309
           W     +G+R TR    LP W     AG
Sbjct: 15  WNHTVSSGERDTRTEYYLPNWTDLVLAG 42



 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +3

Query: 246 WGSHYPAGDRITRLGIALPGWGSHYPAG 329
           W     +G+R TR    LP W     AG
Sbjct: 15  WNHTVSSGERDTRTEYYLPNWTDLVLAG 42



 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +1

Query: 286 WGSHYPAGDRITRLGIALPGW 348
           W     +G+R TR    LP W
Sbjct: 15  WNHTVSSGERDTRTEYYLPNW 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,017
Number of Sequences: 438
Number of extensions: 6016
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)