Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11p01
(478 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein ... 77 1e-16
L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein pro... 53 1e-09
L01589-1|AAA27736.1| 81|Apis mellifera zinc finger protein pro... 45 5e-07
L01587-1|AAA27734.1| 69|Apis mellifera zinc finger protein pro... 44 8e-07
AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein. 36 3e-04
AB208107-1|BAE72139.1| 71|Apis mellifera Broad complex zinc fi... 35 4e-04
AB208106-1|BAE72138.1| 111|Apis mellifera Broad complex zinc fi... 30 0.011
AB208108-1|BAE72140.1| 92|Apis mellifera Broad complex zinc fi... 29 0.034
DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein. 23 2.2
>AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein 1
protein.
Length = 500
Score = 76.6 bits (180), Expect = 1e-16
Identities = 42/130 (32%), Positives = 60/130 (46%), Gaps = 1/130 (0%)
Frame = -3
Query: 476 AYLKLHMQLHNDVKKFKCSKCEDMLPTKNCLKIHMKKHTKVKNFKCDYCHKLFVSKITME 297
A L H + H K ++C C K L +H + HTK + +KCD C + F +
Sbjct: 105 ARLTRHYRTHTGEKPYQCEYCSKSFSVKENLSVHRRIHTKERPYKCDVCERAFEHSGKLH 164
Query: 296 RHRQTHEGQPIDCQVKCTQCDRT-MHSTLLRTHIARAHSSSLDDDVKRPYKCTTCGKSFI 120
RH + H G+ KCT C +T + S L H+ R H+ ++PY C CGK F
Sbjct: 165 RHMRIHTGER---PHKCTVCSKTFIQSGQLVIHM-RTHTG------EKPYVCKACGKGFT 214
Query: 119 VKINLNLHIR 90
L +H R
Sbjct: 215 CSKQLKVHTR 224
Score = 66.1 bits (154), Expect = 2e-13
Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
Frame = -3
Query: 431 FKCSKCEDMLPTKNCLKIHMKKHTKVKNFKCDYCHKLFVSKITMERHRQTHEGQPIDCQV 252
++C+ C L H + HT K ++C+YC K F K + HR+ H +
Sbjct: 92 YRCNICGKTFAVPARLTRHYRTHTGEKPYQCEYCSKSFSVKENLSVHRRIHTKER---PY 148
Query: 251 KCTQCDRTM-HSTLLRTHIARAHSSSLDDDVKRPYKCTTCGKSFIVKINLNLHIR 90
KC C+R HS L H+ R H+ +RP+KCT C K+FI L +H+R
Sbjct: 149 KCDVCERAFEHSGKLHRHM-RIHTG------ERPHKCTVCSKTFIQSGQLVIHMR 196
Score = 63.3 bits (147), Expect = 1e-12
Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 2/129 (1%)
Frame = -3
Query: 470 LKLHMQLHNDVKKFKCSKCEDMLPTKNCLKIHMKKHTKVKNFKCDYCHKLFVSKITMERH 291
L HM++H + KC+ C L IHM+ HT K + C C K F ++ H
Sbjct: 163 LHRHMRIHTGERPHKCTVCSKTFIQSGQLVIHMRTHTGEKPYVCKACGKGFTCSKQLKVH 222
Query: 290 RQTHEGQ-PIDCQVKCTQCDRTM-HSTLLRTHIARAHSSSLDDDVKRPYKCTTCGKSFIV 117
+TH G+ P C + C ++ ++ +L+ H AH ++ YKCT C ++F
Sbjct: 223 TRTHTGEKPYTCDI----CGKSFGYNHVLKLHQV-AHYG------EKVYKCTLCHETFGS 271
Query: 116 KINLNLHIR 90
K + LHI+
Sbjct: 272 KKTMELHIK 280
Score = 58.8 bits (136), Expect = 3e-11
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Frame = -3
Query: 470 LKLHMQLHNDVKKFKCSKCEDMLPTKNCLKIHMKKHTKVKNFKCDYCHKLFVSKITMERH 291
L +HM+ H K + C C LK+H + HT K + CD C K F ++ H
Sbjct: 191 LVIHMRTHTGEKPYVCKACGKGFTCSKQLKVHTRTHTGEKPYTCDICGKSFGYNHVLKLH 250
Query: 290 RQTHEGQPIDCQVKCTQCDRTMHS-TLLRTHIARAHSSS 177
+ H G+ + KCT C T S + HI + HS S
Sbjct: 251 QVAHYGEKV---YKCTLCHETFGSKKTMELHI-KTHSDS 285
Score = 56.4 bits (130), Expect = 1e-10
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Frame = -3
Query: 437 KKFKCSKCEDMLPTKNCLKIHMKKHTKVKN--FKCDYCHKLFVSKITMERHRQTHEGQ-P 267
K ++C C+ KN + H++ H K ++C+ C K F + RH +TH G+ P
Sbjct: 60 KTYQCLLCQKAFDQKNLYQSHLRSHGKEGEDPYRCNICGKTFAVPARLTRHYRTHTGEKP 119
Query: 266 IDCQVKCTQCDRTMHSTLLRTHIARAHSSSLDDDVKRPYKCTTCGKSFIVKINLNLHIRV 87
C+ C++ + L H R H+ +RPYKC C ++F L+ H+R+
Sbjct: 120 YQCEY-CSKSFSVKEN--LSVH-RRIHTK------ERPYKCDVCERAFEHSGKLHRHMRI 169
Score = 56.0 bits (129), Expect = 2e-10
Identities = 25/69 (36%), Positives = 34/69 (49%)
Frame = -3
Query: 470 LKLHMQLHNDVKKFKCSKCEDMLPTKNCLKIHMKKHTKVKNFKCDYCHKLFVSKITMERH 291
LK+H + H K + C C + LK+H H K +KC CH+ F SK TME H
Sbjct: 219 LKVHTRTHTGEKPYTCDICGKSFGYNHVLKLHQVAHYGEKVYKCTLCHETFGSKKTMELH 278
Query: 290 RQTHEGQPI 264
+TH +
Sbjct: 279 IKTHSDSSV 287
Score = 53.2 bits (122), Expect = 1e-09
Identities = 33/118 (27%), Positives = 53/118 (44%)
Frame = -3
Query: 440 VKKFKCSKCEDMLPTKNCLKIHMKKHTKVKNFKCDYCHKLFVSKITMERHRQTHEGQPID 261
VK CS + + C + + K ++C C K F K + H ++H G+ +
Sbjct: 31 VKSLVCSPDLSVFTSPACGSETPLTNIEEKTYQCLLCQKAFDQKNLYQSHLRSH-GKEGE 89
Query: 260 CQVKCTQCDRTMHSTLLRTHIARAHSSSLDDDVKRPYKCTTCGKSFIVKINLNLHIRV 87
+C C +T T R H+ ++PY+C C KSF VK NL++H R+
Sbjct: 90 DPYRCNICGKTFAVPARLTRHYRTHTG------EKPYQCEYCSKSFSVKENLSVHRRI 141
>L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein
protein.
Length = 74
Score = 53.2 bits (122), Expect = 1e-09
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = -3
Query: 449 HNDVKKFKCSKCEDMLPTKNCLKIHMKKHTKVKNFKCDYCHKLFVSKITMERHRQTHEGQ 270
H K F+C +C + LK HM+ HT K + C +C + FV + RH + H G+
Sbjct: 4 HTGEKPFECPECHKRFTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVHTGE 63
Query: 269 -PIDCQV 252
P C++
Sbjct: 64 RPYACEL 70
Score = 44.0 bits (99), Expect = 8e-07
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = -3
Query: 371 KKHTKVKNFKCDYCHKLFVSKITMERHRQTHEGQPIDCQVKCTQCDRT-MHSTLLRTHIA 195
+ HT K F+C CHK F ++ H + H G+ C+ CDR + LR H+
Sbjct: 2 RTHTGEKPFECPECHKRFTRDHHLKTHMRLHTGEK---PYHCSHCDRQFVQVANLRRHL- 57
Query: 194 RAHSSSLDDDVKRPYKCTTC 135
R H+ +RPY C C
Sbjct: 58 RVHTG------ERPYACELC 71
Score = 41.5 bits (93), Expect = 4e-06
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -3
Query: 473 YLKLHMQLHNDVKKFKCSKCEDMLPTKNCLKIHMKKHTKVKNFKCDYC 330
+LK HM+LH K + CS C+ L+ H++ HT + + C+ C
Sbjct: 24 HLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVHTGERPYACELC 71
Score = 35.1 bits (77), Expect = 4e-04
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = -3
Query: 287 QTHEGQ-PIDCQVKCTQCDRTMHSTLLRTHIARAHSSSLDDDVKRPYKCTTCGKSFIVKI 111
+TH G+ P +C + R H L+TH+ R H+ ++PY C+ C + F+
Sbjct: 2 RTHTGEKPFECPECHKRFTRDHH---LKTHM-RLHTG------EKPYHCSHCDRQFVQVA 51
Query: 110 NLNLHIRV 87
NL H+RV
Sbjct: 52 NLRRHLRV 59
>L01589-1|AAA27736.1| 81|Apis mellifera zinc finger protein
protein.
Length = 81
Score = 44.8 bits (101), Expect = 5e-07
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = -3
Query: 437 KKFKCSKCEDMLPTKNCLKIHMKKHTKVKNFKCDYCHKLFVSKITMERHRQTHEGQ-PID 261
K F C CE + + LK+H++ HT KC C K F ++ H +TH G+ P
Sbjct: 15 KSFSCKYCEKVYVSLGALKMHIRTHT--LPCKCHLCGKAFSRPWLLQGHIRTHTGEKPFS 72
Query: 260 CQ 255
CQ
Sbjct: 73 CQ 74
Score = 41.5 bits (93), Expect = 4e-06
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = -3
Query: 353 KNFKCDYCHKLFVSKITMERHRQTHEGQPIDCQVKCTQCDRTM-HSTLLRTHIARAHSSS 177
K+F C YC K++VS ++ H +TH + C KC C + LL+ HI R H+
Sbjct: 15 KSFSCKYCEKVYVSLGALKMHIRTH---TLPC--KCHLCGKAFSRPWLLQGHI-RTHTG- 67
Query: 176 LDDDVKRPYKCTTCGKSF 123
++P+ C C ++F
Sbjct: 68 -----EKPFSCQHCNRAF 80
Score = 34.3 bits (75), Expect = 7e-04
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -3
Query: 470 LKLHMQLHNDVKKFKCSKCEDMLPTKNCLKIHMKKHTKVKNFKCDYCHKLF 318
LK+H++ H KC C L+ H++ HT K F C +C++ F
Sbjct: 32 LKMHIRTHT--LPCKCHLCGKAFSRPWLLQGHIRTHTGEKPFSCQHCNRAF 80
Score = 25.4 bits (53), Expect = 0.32
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = -3
Query: 188 HSSSLDDDVKRPYKCTTCGKSFIVKINLNLHIR 90
H ++ + K+ + C C K ++ L +HIR
Sbjct: 5 HCAAAEGQAKKSFSCKYCEKVYVSLGALKMHIR 37
Score = 24.2 bits (50), Expect = 0.73
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Frame = -3
Query: 293 HRQTH----EGQPIDCQVKCTQCDRTMHST-LLRTHIARAHSSSLDDDVKRPYKCTTCGK 129
H+Q H EGQ C C++ S L+ HI R H+ P KC CGK
Sbjct: 1 HQQFHCAAAEGQAKK-SFSCKYCEKVYVSLGALKMHI-RTHTL--------PCKCHLCGK 50
Query: 128 SFIVKINLNLHIR 90
+F L HIR
Sbjct: 51 AFSRPWLLQGHIR 63
>L01587-1|AAA27734.1| 69|Apis mellifera zinc finger protein
protein.
Length = 69
Score = 44.0 bits (99), Expect = 8e-07
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -3
Query: 473 YLKLHMQLHNDVKKFKCSKCEDMLPTKNCLKIHMKKHTKVKNFKCDYC 330
+L+ H++ H K FKC KC K+ L H+K H+ V ++C C
Sbjct: 3 HLEYHLRNHFGSKPFKCEKCSYSCVNKSMLNSHLKSHSNVYQYRCANC 50
Score = 35.9 bits (79), Expect = 2e-04
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -3
Query: 395 KNCLKIHMKKHTKVKNFKCDYCHKLFVSKITMERHRQTHEGQPIDCQVKCTQCD-RTMHS 219
K+ L+ H++ H K FKC+ C V+K + H ++H Q +C C T +
Sbjct: 1 KHHLEYHLRNHFGSKPFKCEKCSYSCVNKSMLNSHLKSHSNV---YQYRCANCTYATKYC 57
Query: 218 TLLRTHIAR 192
L+ H+ +
Sbjct: 58 HSLKLHLRK 66
Score = 31.1 bits (67), Expect = 0.006
Identities = 10/37 (27%), Positives = 24/37 (64%)
Frame = -3
Query: 470 LKLHMQLHNDVKKFKCSKCEDMLPTKNCLKIHMKKHT 360
L H++ H++V +++C+ C + LK+H++K++
Sbjct: 32 LNSHLKSHSNVYQYRCANCTYATKYCHSLKLHLRKYS 68
Score = 25.8 bits (54), Expect = 0.24
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 158 RPYKCTTCGKSFIVKINLNLHIR 90
+P+KC C S + K LN H++
Sbjct: 15 KPFKCEKCSYSCVNKSMLNSHLK 37
>AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein.
Length = 429
Score = 35.5 bits (78), Expect = 3e-04
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -3
Query: 347 FKCDYCHKLFVSKITMERHRQTHEGQPIDCQVKCTQCDRTMHS 219
+ CD C K +K+T++RH++ QP++ V C C + +
Sbjct: 372 YTCDVCGKTLSTKLTLKRHKEQQHFQPLNSAV-CALCHKVFRT 413
Score = 29.9 bits (64), Expect = 0.015
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -3
Query: 431 FKCSKCEDMLPTKNCLKIHMKK-HTKVKNFK-CDYCHKLFVSKITMERHRQTH 279
+ C C L TK LK H ++ H + N C CHK+F + ++ H+ +
Sbjct: 372 YTCDVCGKTLSTKLTLKRHKEQQHFQPLNSAVCALCHKVFRTLNSLNNHKSIY 424
Score = 24.2 bits (50), Expect = 0.73
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = -3
Query: 152 YKCTTCGKSFIVKINLNLH 96
Y C CGK+ K+ L H
Sbjct: 372 YTCDVCGKTLSTKLTLKRH 390
>AB208107-1|BAE72139.1| 71|Apis mellifera Broad complex zinc
finger domain-Z2 isoform protein.
Length = 71
Score = 35.1 bits (77), Expect = 4e-04
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = -3
Query: 353 KNFKCDYCHKLFVSKITMERHRQTHEGQPIDCQVKCTQCDRTMHS-TLLRTHIARAHSSS 177
K F C C K+ SK +++RH + + + +C C+R S L THI H S
Sbjct: 4 KLFTCQLCGKVLCSKASLKRHVADKHAERQE-EYRCVICERVYCSRNSLMTHIYTYHKSR 62
Query: 176 LDD-DVK 159
D D+K
Sbjct: 63 PGDIDIK 69
Score = 20.6 bits (41), Expect = 9.0
Identities = 7/27 (25%), Positives = 16/27 (59%)
Frame = -3
Query: 437 KKFKCSKCEDMLPTKNCLKIHMKKHTK 357
++++C CE + ++N L H+ + K
Sbjct: 34 EEYRCVICERVYCSRNSLMTHIYTYHK 60
>AB208106-1|BAE72138.1| 111|Apis mellifera Broad complex zinc
finger domain-Z1 isoform protein.
Length = 111
Score = 30.3 bits (65), Expect = 0.011
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = -3
Query: 347 FKCDYCHKLFVSKITMERHRQTHEGQPIDCQVKCTQCDRTMHS-TLLRTHIARAHSSSLD 171
F+C+ C+K+ S + RH Q +P + C C R S LR H + H
Sbjct: 3 FRCEPCNKILTSLTRLRRHIQNVHTRPSKEPI-CNICKRVYSSLNSLRNHKSIYHRQHSK 61
Query: 170 DDVKR 156
++ +R
Sbjct: 62 NEQQR 66
>AB208108-1|BAE72140.1| 92|Apis mellifera Broad complex zinc
finger domain-Z3 isoform protein.
Length = 92
Score = 28.7 bits (61), Expect = 0.034
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -3
Query: 344 KCDYCHKLFVSKITMERHRQTHEGQPIDCQVKCTQCDRTMHS-TLLRTHIARAHSSSLDD 168
+C YC + F +++RH Q Q D C C+R + L TH + H S
Sbjct: 7 ECPYCRRNFSCYYSLKRHFQDKHEQS-DTLYVCEFCNRRYRTKNSLTTHKSLQHRGS-SG 64
Query: 167 DVKRPYKCT 141
+KR K T
Sbjct: 65 MLKRLLKTT 73
>DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein.
Length = 120
Score = 22.6 bits (46), Expect = 2.2
Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Frame = -3
Query: 338 DYCHKLFVSKITMERHRQTHEGQPIDCQVKCTQC-DRTMHSTLLRTHIARAHSSSLDDDV 162
+YC L +TM + +C C + R H+ + + V
Sbjct: 12 EYCPDL--DNVTMPETTPRRKKNKKPLPTECVFCRNNGEEEAYYRKHLLKDADGRVSCPV 69
Query: 161 KRPYKCTTCG 132
R Y C CG
Sbjct: 70 LRAYTCPICG 79
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,184
Number of Sequences: 438
Number of extensions: 2737
Number of successful extensions: 41
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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