Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11o10
         (228 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   1.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   2.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   2.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   3.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    19   5.9  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    19   7.8  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 1.5
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 64  CATASQWQNAIN 99
           C T  QW N+IN
Sbjct: 412 CRTPFQWDNSIN 423


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.6 bits (41), Expect = 2.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 101 MFIAFCHCEAVAQSNCNVR 45
           +F+AF   ++  +S C+VR
Sbjct: 4   VFVAFLPVKSFRESRCSVR 22


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 2.5
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +1

Query: 43  HLTLQFDCATASQW 84
           H+T   DC+T S++
Sbjct: 958 HITTTIDCSTQSEY 971


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 3.4
 Identities = 9/38 (23%), Positives = 14/38 (36%)
 Frame = -2

Query: 137 SRRRETVLSYVIMFIAFCHCEAVAQSNCNVR*SVGXLC 24
           +R  + +  Y     A CHC      +C +    G  C
Sbjct: 730 ARSEQFLCRYEAHCFALCHCCDFDACDCEMTCPAGCKC 767


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 19.4 bits (38), Expect = 5.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +1

Query: 82  WQNAINIIT 108
           W+N +NIIT
Sbjct: 384 WENEMNIIT 392


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 19.0 bits (37), Expect = 7.8
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +3

Query: 72  GFAVAKCYKHNYIR*YGFASTGP 140
           GF   K YK+ +I+       GP
Sbjct: 91  GFEFGKEYKNGFIKGQSEVQRGP 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,341
Number of Sequences: 438
Number of extensions: 1086
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3659655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)