Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11o08
         (563 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    24   1.0  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    23   1.8  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    23   1.8  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   2.4  
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    22   3.2  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   9.6  

>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +1

Query: 406 CQQKELSALVCKDYFVLNNYEAKY-ACPRDFRL 501
           C   +++  +C D  V N+Y ++Y  C   F +
Sbjct: 58  CNDGQITEKLCPDGMVFNDYSSEYEKCDLPFNI 90


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 287 CNCILQLQLCFVMSLLL 237
           CN ++   +CF+M L+L
Sbjct: 161 CNTVISATVCFMMLLML 177


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 287 CNCILQLQLCFVMSLLL 237
           CN ++   +CF+M L+L
Sbjct: 157 CNTVISATVCFMMLLML 173


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 317 SPAPFIFKYVCYVLLAHCCSIVLVFQMIKVVNKKSCLRWYVKI 445
           +PAPF+ K   Y L A    I  ++     V+   C+R+ V +
Sbjct: 528 APAPFLLKRENYTLPASAVGIAWLY-----VDNDCCIRYDVSL 565


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 431 WYVKIILC*IIMKQNTRVRVIFGWWLYRIQIERFNAST 544
           WY   +LC II      V     + L  + I+R++A T
Sbjct: 112 WYAGNVLCKIIRFLQAVVTYSSTYVLVALSIDRYDAIT 149


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -1

Query: 164 CLCFNCYKAIQ 132
           C+C  CY  IQ
Sbjct: 924 CICHVCYSTIQ 934


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,914
Number of Sequences: 336
Number of extensions: 2373
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13890653
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)