Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11o08
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    27   2.5  
SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces p...    26   4.4  
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch...    25   5.8  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    25   7.7  

>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -2

Query: 556 PERCCRSIKTLNLNSVEPPAENHADTRILLHNYSAQNNLYIP 431
           P     S+ + N  SV   + NH+ T     N S +NNL IP
Sbjct: 448 PPITAASVDSSNSFSVHRSSTNHSSTNSGSPNLSRRNNLAIP 489


>SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 115

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 434 YVKIILC*IIMKQNTRV 484
           Y+KII+C +++K NT V
Sbjct: 77  YIKIIICSVLLKLNTTV 93


>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = +3

Query: 288 TVASSLTCYIAQHL--SSLNTFAT 353
           T +SSL CYI +HL  S+ N ++T
Sbjct: 10  TSSSSLPCYILRHLPFSNFNRYST 33


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 365 HCCSIVLVFQMIKVVNKKSCLRWY 436
           H CS+ L+F+ I  V K   LRW+
Sbjct: 760 HACSLTLIFKSIWKVKK---LRWF 780


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,093,415
Number of Sequences: 5004
Number of extensions: 37972
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)