Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11o08
         (563 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0075 - 838358-838945,847120-847282,847581-847687                 29   3.4  
11_06_0151 - 20643032-20643085,20643202-20643307,20643415-206434...    28   5.9  
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914...    27   7.8  

>04_01_0075 - 838358-838945,847120-847282,847581-847687
          Length = 285

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -2

Query: 505 PPAE-NHADTRILLHNYSAQNNLYIPTQTTLFVDNFNHLKHQNYRAT 368
           PP + NH  +  LL +YS   N+ +P Q ++ V +      Q+Y  T
Sbjct: 30  PPLDPNHVTSVELLDHYSLDPNMILPYQASMLVISLIDTDRQSYVCT 76


>11_06_0151 - 20643032-20643085,20643202-20643307,20643415-20643495,
            20643588-20643715,20643829-20643903,20644853-20645374,
            20646622-20646687,20647990-20648076,20648173-20648247,
            20648705-20648821,20648932-20649015,20649152-20649217,
            20649352-20649417,20650079-20650150,20650231-20650332,
            20650428-20650605,20650700-20650755,20653159-20653269,
            20653354-20653422,20653558-20653741,20653826-20653914,
            20654070-20654147,20654509-20654631,20654755-20654874,
            20654975-20655055,20655285-20655431,20655533-20655611,
            20657114-20657223,20659138-20659236,20659467-20659582,
            20659673-20659781,20659839-20660069,20660152-20660417,
            20661349-20661506,20661601-20661751,20661897-20661966,
            20662203-20662232
          Length = 1451

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -2

Query: 502  PAENHADTRILLHNYSAQNNLYIPTQTTLFVDNFNHLKHQ 383
            PA  H D   L+  Y  Q  ++ P Q     + F+HL  Q
Sbjct: 1276 PAPEHGDDERLVMYYQGQEYIFDPVQPQKIENIFHHLNGQ 1315


>10_06_0105 - 10790092-10790323,10791092-10791234,10791322-10791429,
            10791796-10791903,10793133-10797686,10798347-10798461,
            10799597-10799724,10799843-10800043,10800158-10800227,
            10801233-10801314,10801433-10801556,10801761-10801778
          Length = 1960

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -2

Query: 541  RSIKTLNLNSVEPPAENHADTRILLHNYSAQNNLYIPTQTTLFVDNFNHLKHQN 380
            RS+ + NL   EP  ENH+  +  + + S ++   +      F      LK++N
Sbjct: 1756 RSVPSKNLEECEPSLENHSTGKTSIEDISMEHR-KLAVDLNHFHQELERLKNEN 1808


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,351,392
Number of Sequences: 37544
Number of extensions: 199701
Number of successful extensions: 405
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)