Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11o08
         (563 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32822| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_17208| Best HMM Match : RVT_1 (HMM E-Value=6.4e-19)                 28   6.1  
SB_3565| Best HMM Match : ASC (HMM E-Value=1.1e-12)                    28   6.1  
SB_41172| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-21)                 28   6.1  

>SB_32822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1409

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 341 YVCYVLLAHCCSIVLVFQMIKVVNKKSCLRWY 436
           YVC++LLA  C +VL   ++ +  K SC   Y
Sbjct: 91  YVCWILLAFVCCVVL---LVLIGRKNSCYNRY 119


>SB_17208| Best HMM Match : RVT_1 (HMM E-Value=6.4e-19)
          Length = 1053

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 550 RCCRSIKTLNLNSVEPPAENHADTRILLHNYSAQNNL 440
           R CRS +T ++N VE  A  + D     H Y A   L
Sbjct: 613 RVCRSTRTSSVNQVEKAASKYNDDDDATHAYFASVEL 649


>SB_3565| Best HMM Match : ASC (HMM E-Value=1.1e-12)
          Length = 575

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 492 ITRTRVFCFIIIQHKIIFTYQRR 424
           I+  RVFCF+I++  + F + RR
Sbjct: 366 ISLYRVFCFVIVKKSLSFQFHRR 388


>SB_41172| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-21)
          Length = 342

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +2

Query: 140 LYNN*NISMWQLVRSSFITIITLRCVLYCSSSIIIKTLQ 256
           LY +  +S W L+ SSF+T+  + C  + + ++ ++  Q
Sbjct: 99  LYMSFELSTWLLLMSSFLTLTAISCERFAALTLHLRYQQ 137


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,189,722
Number of Sequences: 59808
Number of extensions: 261386
Number of successful extensions: 629
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)