Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11o08
         (563 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            25   1.7  
AF457566-1|AAL68796.1|  147|Anopheles gambiae multiprotein bridg...    25   1.7  
EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    24   3.9  
AY579077-1|AAT81601.1|  101|Anopheles gambiae neuropeptide F pro...    23   9.1  
AF291654-1|AAG00600.1| 1340|Anopheles gambiae thioester-containi...    23   9.1  

>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 409  QQKELSALVCKDYFVLNNYEAKYACPRDFRLVA 507
            + K+   L  K+Y VL  Y+ +YA   + +++A
Sbjct: 1796 ENKQYQGLPGKEYTVLGKYKRRYAMRPEIKVLA 1828


>AF457566-1|AAL68796.1|  147|Anopheles gambiae multiprotein bridging
           factor-like proteinprotein.
          Length = 147

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 412 QKELSALVCKDYFVLNNYEAKYACPRDFRL 501
           QK+L+  +C+   ++N+YEA    P +  L
Sbjct: 92  QKDLATQICEKPQIVNDYEAGRGVPNNLIL 121


>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
           channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 105 FWHLKLNLILNCFITIET*ACGS*SDPVSLQS-SHCDVFYTARHL 236
           F   K+N ++    + E  A  S SDP S  S +H   FY AR +
Sbjct: 104 FMDFKMNAVMRIMDSAEQ-AALSESDPESATSKAHPSAFYDARRI 147


>AY579077-1|AAT81601.1|  101|Anopheles gambiae neuropeptide F
           protein.
          Length = 101

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 17  QMSKRTFSLYSAVFCYNEKNNLIKLLGK 100
           +  KR   L  A+F  +E+ NL +L+G+
Sbjct: 61  RFGKRGGYLNPAIFGQDEQENLYRLIGR 88


>AF291654-1|AAG00600.1| 1340|Anopheles gambiae thioester-containing
           protein I protein.
          Length = 1340

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 164 MWQLVRSSFITII 202
           MWQ +RS  +T+I
Sbjct: 1   MWQFIRSRILTVI 13


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 539,072
Number of Sequences: 2352
Number of extensions: 9237
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 52983882
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)