Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11o08
         (563 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U69274-1|AAD00172.1| 1053|Homo sapiens zinc finger protein protein.    29   8.5  
BX538101-1|CAD98016.1|  672|Homo sapiens hypothetical protein pr...    29   8.5  
BX538016-1|CAD97963.1|  673|Homo sapiens hypothetical protein pr...    29   8.5  
BC111700-1|AAI11701.1| 1053|Homo sapiens zinc finger and BTB dom...    29   8.5  
BC042753-1|AAH42753.1|  673|Homo sapiens zinc finger and BTB dom...    29   8.5  
AC002086-1|AAB54087.1|  672|Homo sapiens WUGSC:H_DJ525N14.1 prot...    29   8.5  

>U69274-1|AAD00172.1| 1053|Homo sapiens zinc finger protein protein.
          Length = 1053

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 9/20 (45%), Positives = 17/20 (85%)
 Frame = -3

Query: 258 FCNVFIIIDDEQYKTHRNVM 199
           FC+V ++I+ E+YK H++V+
Sbjct: 213 FCDVTLLIEGEEYKAHKSVL 232


>BX538101-1|CAD98016.1|  672|Homo sapiens hypothetical protein
           protein.
          Length = 672

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 7/20 (35%), Positives = 17/20 (85%)
 Frame = -3

Query: 258 FCNVFIIIDDEQYKTHRNVM 199
           FC+V +I++D +++ H+N++
Sbjct: 31  FCDVTVIVEDRKFRAHKNIL 50


>BX538016-1|CAD97963.1|  673|Homo sapiens hypothetical protein
           protein.
          Length = 673

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 7/20 (35%), Positives = 17/20 (85%)
 Frame = -3

Query: 258 FCNVFIIIDDEQYKTHRNVM 199
           FC+V +I++D +++ H+N++
Sbjct: 31  FCDVTVIVEDRKFRAHKNIL 50


>BC111700-1|AAI11701.1| 1053|Homo sapiens zinc finger and BTB domain
           containing 11 protein.
          Length = 1053

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 9/20 (45%), Positives = 17/20 (85%)
 Frame = -3

Query: 258 FCNVFIIIDDEQYKTHRNVM 199
           FC+V ++I+ E+YK H++V+
Sbjct: 213 FCDVTLLIEGEEYKAHKSVL 232


>BC042753-1|AAH42753.1|  673|Homo sapiens zinc finger and BTB domain
           containing 33 protein.
          Length = 673

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 7/20 (35%), Positives = 17/20 (85%)
 Frame = -3

Query: 258 FCNVFIIIDDEQYKTHRNVM 199
           FC+V +I++D +++ H+N++
Sbjct: 31  FCDVTVIVEDRKFRAHKNIL 50


>AC002086-1|AAB54087.1|  672|Homo sapiens WUGSC:H_DJ525N14.1
           protein.
          Length = 672

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 7/20 (35%), Positives = 17/20 (85%)
 Frame = -3

Query: 258 FCNVFIIIDDEQYKTHRNVM 199
           FC+V +I++D +++ H+N++
Sbjct: 31  FCDVTVIVEDRKFRAHKNIL 50


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,762,662
Number of Sequences: 237096
Number of extensions: 1179328
Number of successful extensions: 1955
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1955
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5703349406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)