Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11o08
         (563 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ277968-1|CAB96205.1| 1128|Drosophila melanogaster TRPgamma cat...    28   7.6  
AJ277967-1|CAB96204.1| 1128|Drosophila melanogaster TRPgamma cat...    28   7.6  
AE014134-2741|AAN10950.1| 1128|Drosophila melanogaster CG5996-PB...    28   7.6  
AE014134-2740|AAF53548.2| 1128|Drosophila melanogaster CG5996-PA...    28   7.6  

>AJ277968-1|CAB96205.1| 1128|Drosophila melanogaster TRPgamma cation
           channel long form protein.
          Length = 1128

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 469 LHNYSAQNNLYIPTQTTLFVDNFNHLKHQN 380
           L NY  Q+ +   T +TLF  NF H + Q+
Sbjct: 839 LDNYDNQHEILSSTLSTLFTPNFMHKRQQS 868


>AJ277967-1|CAB96204.1| 1128|Drosophila melanogaster TRPgamma cation
           channel short form protein.
          Length = 1128

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 469 LHNYSAQNNLYIPTQTTLFVDNFNHLKHQN 380
           L NY  Q+ +   T +TLF  NF H + Q+
Sbjct: 839 LDNYDNQHEILSSTLSTLFTPNFMHKRQQS 868


>AE014134-2741|AAN10950.1| 1128|Drosophila melanogaster CG5996-PB,
           isoform B protein.
          Length = 1128

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 469 LHNYSAQNNLYIPTQTTLFVDNFNHLKHQN 380
           L NY  Q+ +   T +TLF  NF H + Q+
Sbjct: 839 LDNYDNQHEILSSTLSTLFTPNFMHKRQQS 868


>AE014134-2740|AAF53548.2| 1128|Drosophila melanogaster CG5996-PA,
           isoform A protein.
          Length = 1128

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 469 LHNYSAQNNLYIPTQTTLFVDNFNHLKHQN 380
           L NY  Q+ +   T +TLF  NF H + Q+
Sbjct: 839 LDNYDNQHEILSSTLSTLFTPNFMHKRQQS 868


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,185,770
Number of Sequences: 53049
Number of extensions: 389173
Number of successful extensions: 774
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2193288294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)