Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11o08
         (563 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82278-9|CAE17877.1|  323|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z82070-8|CAE17980.1|  323|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z81523-4|CAB04243.1|  824|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AY340594-1|AAQ17186.1|  824|Caenorhabditis elegans SPD-2 protein.      29   2.3  
Z73898-9|CAA98066.2|  913|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AF100672-1|AAC68997.2|  334|Caenorhabditis elegans Hypothetical ...    27   7.0  

>Z82278-9|CAE17877.1|  323|Caenorhabditis elegans Hypothetical
           protein W04E12.9 protein.
          Length = 323

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -2

Query: 466 HNYSAQNNLYIPTQTTLFVDNFNHLKHQNYRATMC**YVANVFKDERCW 320
           HN     +L++ + TT  + NF   KH+N+ + +   +   + K +R W
Sbjct: 21  HNLYIYLHLFVQSNTTTIISNFRKQKHENHSSEVS-MHQHRISKKKRIW 68


>Z82070-8|CAE17980.1|  323|Caenorhabditis elegans Hypothetical
           protein W04E12.9 protein.
          Length = 323

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -2

Query: 466 HNYSAQNNLYIPTQTTLFVDNFNHLKHQNYRATMC**YVANVFKDERCW 320
           HN     +L++ + TT  + NF   KH+N+ + +   +   + K +R W
Sbjct: 21  HNLYIYLHLFVQSNTTTIISNFRKQKHENHSSEVS-MHQHRISKKKRIW 68


>Z81523-4|CAB04243.1|  824|Caenorhabditis elegans Hypothetical
           protein F32H2.3 protein.
          Length = 824

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -2

Query: 520 LNSVEPPAENHADTRILLHNYSAQNNLYIPTQTTLFVDNFNHLKHQ 383
           +N   PP + H      +H+Y  Q    I T + +F  N NH K++
Sbjct: 139 MNGASPPKDKHHSWEPSIHHYDKQPPPDIQTNSPVF-GNLNHRKNK 183


>AY340594-1|AAQ17186.1|  824|Caenorhabditis elegans SPD-2 protein.
          Length = 824

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -2

Query: 520 LNSVEPPAENHADTRILLHNYSAQNNLYIPTQTTLFVDNFNHLKHQ 383
           +N   PP + H      +H+Y  Q    I T + +F  N NH K++
Sbjct: 139 MNGASPPKDKHHSWEPSIHHYDKQPPPDIQTNSPVF-GNLNHRKNK 183


>Z73898-9|CAA98066.2|  913|Caenorhabditis elegans Hypothetical
           protein ZK822.1 protein.
          Length = 913

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
 Frame = -2

Query: 559 RPERCCRSIKTLNLNSVE--------PPAENHADTRILLHNYSAQNNLYIPTQTTLF 413
           R E   RSIK +  NS++        PPA     T I+       NN++ P  T +F
Sbjct: 695 RNEETKRSIKFMKTNSIDHGYNAYEPPPASRTTTTTIVASTQDISNNVHSPHGTPVF 751


>AF100672-1|AAC68997.2|  334|Caenorhabditis elegans Hypothetical
           protein W05E7.2 protein.
          Length = 334

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 317 SPAPFIFKYVCYVLLAHCCSIVLVFQMIKVVNK 415
           SP+PF F ++  ++   CC IVL F     VNK
Sbjct: 17  SPSPFHFLWISTLVCILCCYIVL-FPFYVYVNK 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,739,048
Number of Sequences: 27780
Number of extensions: 215575
Number of successful extensions: 507
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)