Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11o02
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 37 0.003
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 33 0.036
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.19
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 30 0.25
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 30 0.33
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 29 0.44
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 29 0.44
SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces ... 28 1.3
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 1.8
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.3
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.1
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 26 4.1
SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual 26 4.1
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 26 5.4
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 5.4
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 26 5.4
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo... 26 5.4
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces... 26 5.4
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 25 7.2
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 25 7.2
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 9.5
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 25 9.5
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 25 9.5
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 36.7 bits (81), Expect = 0.003
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
Frame = +3
Query: 126 TIVTNSGGVQFVGSTVRAGTNSATRLGVSATVGVKVTMSNAVKNTEKTTVGVDCLHISSC 305
T TN F TV + T+S++ ++A GV ++ N E T+ + +
Sbjct: 806 TSSTNEYNTSFHAPTVSSTTSSSSTTSLAANKGVNSNSITSL-NLESTSSVTSTAYTTDS 864
Query: 306 VTVQGLVVTTPPGPSRIQTGNPVGSATSLSSS--VTDNVRAQAEANQVDSTPIAASVVD 476
VT T GPS + + S TSLS+S VT +V + +++ + S D
Sbjct: 865 VT--STTALTSQGPSSSVVSSSLSSTTSLSTSIPVTSSVAPAVTSTGSETSSVVGSGTD 921
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = -2
Query: 589 TATLLLWTGVVLPTVYTTLPSMEFPVSDSSLATFWSGSSTTEAAIGVEST*LASAWARTL 410
+AT WT + T+ + + SS A+ WS SS + + +T +++ T
Sbjct: 922 SATSSSWTAETSSSAITSSVAASVTPTSSSSASSWSSSSEVDPSTAASATGSSTSSIATA 981
Query: 409 SVT 401
SV+
Sbjct: 982 SVS 984
Score = 26.2 bits (55), Expect = 4.1
Identities = 24/123 (19%), Positives = 53/123 (43%), Gaps = 2/123 (1%)
Frame = +3
Query: 108 T*SANETIVTNSGGVQFVGSTVRAGTNSATRLG--VSATVGVKVTMSNAVKNTEKTTVGV 281
T S + +V+ GS+ T+S+T +S+ + ++ S+++ + +
Sbjct: 496 TLSTSSEVVSEVSSTLLSGSSAIPSTSSSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSS 555
Query: 282 DCLHISSCVTVQGLVVTTPPGPSRIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIA 461
ISS ++ + T S + + S+TSLS S + + A+ + I+
Sbjct: 556 SITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSIS 615
Query: 462 ASV 470
+S+
Sbjct: 616 SSI 618
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 33.1 bits (72), Expect = 0.036
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Frame = +3
Query: 333 TPPGPSRIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAASVVDEPDQKVAKELSD 512
TP S + + S+T +SSS+T ++ + A ++ S+ ++ + D AK +S
Sbjct: 148 TPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSGSISSAD---AKTVSA 204
Query: 513 TGNS-IDG-SVV*TVGKTTPVHNNNVAVGDGQQGGADHGVHSGISVA 647
+ NS I G S T ++ N++ + G +GV + +SVA
Sbjct: 205 SSNSTISGFSTSTTSASSSAAGNSSSSSYTSYSGAVSNGV-AQLSVA 250
Score = 31.1 bits (67), Expect = 0.14
Identities = 16/80 (20%), Positives = 35/80 (43%)
Frame = +3
Query: 354 IQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAASVVDEPDQKVAKELSDTGNSIDG 533
I + S +S +++ + + + ++ STPI++S+ + +S + S G
Sbjct: 133 IYSSTSASSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSG 192
Query: 534 SVV*TVGKTTPVHNNNVAVG 593
S+ KT +N+ G
Sbjct: 193 SISSADAKTVSASSNSTISG 212
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.7 bits (66), Expect = 0.19
Identities = 32/110 (29%), Positives = 44/110 (40%), Gaps = 5/110 (4%)
Frame = +1
Query: 301 PALRFRAWLLPPHLGPAG---SKPV-TLLGLPPACRPALPTTCAPKLKPIKWTRPQLPPP 468
PA+ R+ P LG A + PV T LPP+ P+LP + P L P LPP
Sbjct: 393 PAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPS 452
Query: 469 LLMSQTKKLPRNCPTL-GTPLTAVLYRPLARPRQSTTITLQSETASKAGR 615
++ LP P P A P P + + +E + GR
Sbjct: 453 APIA--PPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIAELPQQDGR 500
Score = 29.1 bits (62), Expect = 0.58
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Frame = +1
Query: 331 PPHLGPA-GSKPVTL-----LGLPPACRPALPTTCAPKLKPI----KWTRPQL--PPPLL 474
PP P+ G +P L + PPA PA+P AP L P+ + + P + PP L
Sbjct: 365 PPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLP 424
Query: 475 MSQTKKLPRNCPTLGTPLTAVLYRPL 552
S LP + P P+ A PL
Sbjct: 425 PSAPPSLPPSAPP-SLPMGAPAAPPL 449
Score = 26.6 bits (56), Expect = 3.1
Identities = 25/63 (39%), Positives = 29/63 (46%)
Frame = +1
Query: 235 P*AMRSKIPRRPPSVWIAST*APALRFRAWLLPPHLGPAGSKPVTLLGLPPACRPALPTT 414
P A S P PPS+ + + AP L A + PP PAG LPPA PA P
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPL--PAGMPAAP--PLPPAA-PAPPPA 479
Query: 415 CAP 423
AP
Sbjct: 480 PAP 482
>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 30.3 bits (65), Expect = 0.25
Identities = 32/107 (29%), Positives = 45/107 (42%), Gaps = 1/107 (0%)
Frame = +3
Query: 84 VLSLIEVVT*SANETIVTNSGGVQFVGSTVRAGTNSAT-RLGVSATVGVKVTMSNAVKNT 260
V +EVV +A T + G QF +T+ + S + + V G VT S +
Sbjct: 890 VTGTVEVVEPAAGTVTGTLTSGSQFFTTTIAQASGSVSGNVEVIEPSGSTVT-STIYSGS 948
Query: 261 EKTTVGVDCLHISSCVTVQGLVVTTPPGPSRIQTGNPVGSATSLSSS 401
E T L + S T+ G V P P+ I TG + T SSS
Sbjct: 949 ESFTT---TLAVGSG-TIPGTVEVILPAPTTIYTGTVATTITYSSSS 991
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 29.9 bits (64), Expect = 0.33
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +3
Query: 312 VQGLVVTTPPGPSRIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAASVVDEPD-Q 488
V G TTP + + + S SLSS+ TDN+ A V T +AASV D
Sbjct: 146 VYGDSATTPAASEAQASSDILSSLASLSSASTDNLAA-----SVTPTTVAASVASSVDTD 200
Query: 489 KVAKELSDTGNSIDGSV 539
+ +S +S SV
Sbjct: 201 SASATISSVVDSATSSV 217
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 29.5 bits (63), Expect = 0.44
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 379 LPPACRPALPTTCAPKLKPIKWTRPQLPPP 468
L P+ P LP + +L P+ TRPQ+P P
Sbjct: 1046 LSPSVTPQLPPVSS-RLPPVSATRPQIPQP 1074
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 29.5 bits (63), Expect = 0.44
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +1
Query: 298 APALRFRAWLLPPHLGPAGSKPVTLLGLPPACR-PALPTTCAPKLKPIKWTRPQLP-PPL 471
APAL LPP P V L P+ P +P T AP L P + P +P PP+
Sbjct: 450 APALSMNPSSLPPWQQPTQQSAVQPSNLVPSQNAPFIPGTSAP-LPPTTFAPPGVPLPPI 508
>SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 201
Score = 27.9 bits (59), Expect = 1.3
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 4/104 (3%)
Frame = +3
Query: 33 LPNTALPMXEGTSRALIVLSL----IEVVT*SANETIVTNSGGVQFVGSTVRAGTNSATR 200
LPN LP + R LI LS + N TN+ ++ GS + + N +R
Sbjct: 72 LPNCTLPKPD-VDRILIRLSQEFTGLSYSLLERNCNHFTNAAAIELTGSPIPSFLNRISR 130
Query: 201 LGVSATVGVKVTMSNAVKNTEKTTVGVDCLHISSCVTVQGLVVT 332
+G++ + + KNT D SS V + L+V+
Sbjct: 131 IGLAFPTITNALLQHGQKNTSDVD---DSSDSSSDVDEETLIVS 171
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.9 bits (59), Expect = 1.3
Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 1/105 (0%)
Frame = +3
Query: 165 STVRAGTNSATRLGVSATVGVKVTMSNAVKNTEKTTVGVDCLHISSCVTVQGLVVTTPPG 344
ST + S G S+++ +T + +T T++ + SS T + TT
Sbjct: 112 STSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTS 171
Query: 345 PSRIQTGNPVGSATSLSSSVTDNV-RAQAEANQVDSTPIAASVVD 476
+ + P G ++SLS+ +T V + + P + S D
Sbjct: 172 CTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTD 216
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 1.8
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = +1
Query: 331 PPHLGPAGSKPVTLLGLPPACRPALPTTCAPKLKPIKWTRPQLPPPLLMSQTKKLPRNCP 510
PP P+G+ PV + PA + P KP P +PPP S+ +P+ P
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGV-PPVPPP---SEAPPVPK--P 1203
Query: 511 TLGTP 525
++G P
Sbjct: 1204 SVGVP 1208
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.1 bits (57), Expect = 2.3
Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 2/119 (1%)
Frame = +3
Query: 117 ANETIVTNSGGVQFVGSTVRAG-TNSATRLGVSATVGVK-VTMSNAVKNTEKTTVGVDCL 290
A+ + ++S ST A T+SAT +S+T T S+ ++ +T
Sbjct: 150 ASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSATAT 209
Query: 291 HISSCVTVQGLVVTTPPGPSRIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAAS 467
S T T+ S + N SAT+ SSS++ V + +ST A S
Sbjct: 210 SSSLSSTAASNSATSSSLAS--SSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATS 266
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Frame = +1
Query: 331 PPHLGPAGSK-PVTLLGLPPACRPALPTTCAPKLKPIKWTRPQLPP 465
P P SK P LPP +PA P P + P +PP
Sbjct: 154 PASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPP 199
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -2
Query: 559 VLPTVYTTLPSMEFPVSDSSLATFWSGSSTTEAAIGVEST 440
VLPT T S VS SSL++F ST G +T
Sbjct: 244 VLPTSIITSTSTPVTVSSSSLSSFTPSYSTNLTTTGSTTT 283
>SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 184 VPALTVEPTNCTPPLFVTIVSLAD 113
+PAL ++P+ CTP SL D
Sbjct: 74 MPALRLKPSQCTPLFLAVYTSLRD 97
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 5.4
Identities = 18/60 (30%), Positives = 24/60 (40%)
Frame = +1
Query: 355 SKPVTLLGLPPACRPALPTTCAPKLKPIKWTRPQLPPPLLMSQTKKLPRNCPTLGTPLTA 534
S PV LL P+LP PK+K + P S + P +G+P TA
Sbjct: 321 SSPVPLLAKKREGSPSLPIPILPKMKDTSIPAAE-PASSTTSARDQTPSTPKDVGSPSTA 379
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 346 PAGSKPVTLLGLPPACRPALPTTCAPKLK-PIKWTRPQLPPP 468
P S P +++ PP+ +P P+ AP P + P PPP
Sbjct: 156 PTVSAPNSMVSPPPSFQP--PSAAAPATSLPSDYNPPPPPPP 195
Score = 25.8 bits (54), Expect = 5.4
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Frame = +1
Query: 388 ACRPALPTTCAPKLKPIKWTRPQLPPPLLMSQ---TKKLP---RNCPTLGTPLTAVLYRP 549
A P +P T PK P PPP L Q T +LP RN LG+ + + P
Sbjct: 218 AVSPEIPPTYTPKQADPLPAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVN--IPPP 275
Query: 550 LARPRQSTTITLQSETAS 603
A P Q + T S
Sbjct: 276 PATPSQPPRPPTNASTRS 293
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.8 bits (54), Expect = 5.4
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +3
Query: 378 SATSLSSSVTDNVRAQAEANQVDSTPIAASVVDEPDQKVAKELSDTGNS 524
S TS+SSS ++N + +VDS P + V D K KE S+ G S
Sbjct: 368 STTSISSSPSENSDTSDDLTKVDS-PNKSLVNDNVSAKHDKE-SENGKS 414
>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 443
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 187 LVPALTVEPTNCTPPLFVTIVSLADYVTTSIRLRTIS 77
L+P++T C PP+FV IV ++ + + L IS
Sbjct: 270 LLPSVTFWQNICYPPIFVKIVDVSLKILFNWDLSNIS 306
>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 178 ALTVEPTNCTPPLFVTIVSLADYVTTSI 95
AL+ PTNC ++ VSL Y+T+++
Sbjct: 678 ALSKFPTNCLRSVYSHTVSLMKYLTSAV 705
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = +1
Query: 370 LLGLPPACRPALPTTCAPKLKPIKWTRPQLPPPLLMSQTKKLPRNCPTLGTP 525
+ G P PA + ++P ++ LPPP K LP +L P
Sbjct: 21 IFGAPRKREPARTVSTPAFMEPAPVSKKPLPPPTRRLPRKPLPFRSTSLQPP 72
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 25.4 bits (53), Expect = 7.2
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Frame = +1
Query: 379 LPPACRPALPTTCAPKLKPIKWTRPQLPP----PLLMSQTKKLPRNCPTLGTPLTAVLYR 546
LPP PA P + P +PP PL+ + T P + P + P TA +
Sbjct: 210 LPPGFSPATPAPTSAANTPATIAATSIPPVPNVPLVGATTAVPPLSIPNV-LPFTAAQHF 268
Query: 547 P 549
P
Sbjct: 269 P 269
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Frame = +1
Query: 334 PHLGPAGSK--PVTL--LGLPPACRPALPTTCAPKLKPIKWTRPQLPPPL 471
P +GP + P+ + G P PA+P+ + P +P P PL
Sbjct: 1590 PRMGPVNNSGSPLAMNAAGQPSLAVPAVPSAPSNHFNPFAKMQPPAPSPL 1639
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1258
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -2
Query: 148 PPLFVTIVSLADYVTTSIRLRTISALEVP 62
P L TI L DY T +R I+ EVP
Sbjct: 692 PYLQTTIHHLEDYATVGLRTLCIAMREVP 720
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +3
Query: 306 VTVQGLVVTTPPGPSRIQTGNPVGSATSLSSSVTDNVRAQAEANQVDST 452
+T+ G+V PG S+ + NP SL S AQ A + T
Sbjct: 365 LTIDGIVYVVDPGFSKQKIYNPRIRVESLLVSPISKASAQQRAGRAGRT 413
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,984,578
Number of Sequences: 5004
Number of extensions: 67653
Number of successful extensions: 252
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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