Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11n23
(252 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z26319-1|CAA81228.1| 464|Apis mellifera royal jelly protein RJP... 23 0.78
AY823258-1|AAX18443.1| 145|Apis mellifera pburs protein. 22 1.4
AM420632-1|CAM06632.1| 145|Apis mellifera bursicon subunit beta... 22 1.4
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 21 1.8
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 21 1.8
AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex det... 21 1.8
DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex det... 21 3.1
DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex det... 21 3.1
DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex det... 21 3.1
DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. 20 4.2
DQ325130-1|ABD14144.1| 174|Apis mellifera complementary sex det... 20 4.2
DQ325129-1|ABD14143.1| 174|Apis mellifera complementary sex det... 20 4.2
DQ325128-1|ABD14142.1| 174|Apis mellifera complementary sex det... 20 4.2
DQ325127-1|ABD14141.1| 174|Apis mellifera complementary sex det... 20 4.2
DQ325126-1|ABD14140.1| 174|Apis mellifera complementary sex det... 20 4.2
DQ325125-1|ABD14139.1| 174|Apis mellifera complementary sex det... 20 4.2
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 20 4.2
DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like recept... 20 5.5
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 20 5.5
L10710-1|AAA27730.1| 382|Apis mellifera hyaluronidase protein. 19 9.6
EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase p... 19 9.6
DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex det... 19 9.6
DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex det... 19 9.6
DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex det... 19 9.6
DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex det... 19 9.6
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 19 9.6
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 19 9.6
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 19 9.6
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 19 9.6
>Z26319-1|CAA81228.1| 464|Apis mellifera royal jelly protein
RJP57-2 protein.
Length = 464
Score = 22.6 bits (46), Expect = 0.78
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +1
Query: 115 RQSFKAALGDLHLTTINNEASLQH 186
R + AL D + +NN+ +L+H
Sbjct: 372 RNEYLLALSDRNQNVLNNDLNLEH 395
>AY823258-1|AAX18443.1| 145|Apis mellifera pburs protein.
Length = 145
Score = 21.8 bits (44), Expect = 1.4
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -2
Query: 209 EEVAQFEKCCKDASLLMVVKCRS-PNAALKDCLSNWYNNEEFKKICTEEYLKER 51
+E+ + ++ C + V KC N+ ++ +++ + C E YLKER
Sbjct: 51 DEIGRLKRTCSGD--ISVTKCEGFCNSQVQPSVASTTGFSKECYCCRESYLKER 102
>AM420632-1|CAM06632.1| 145|Apis mellifera bursicon subunit beta
protein precursor protein.
Length = 145
Score = 21.8 bits (44), Expect = 1.4
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -2
Query: 209 EEVAQFEKCCKDASLLMVVKCRS-PNAALKDCLSNWYNNEEFKKICTEEYLKER 51
+E+ + ++ C + V KC N+ ++ +++ + C E YLKER
Sbjct: 51 DEIGRLKRTCSGD--ISVTKCEGFCNSQVQPSVASTTGFSKECYCCRESYLKER 102
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 21.4 bits (43), Expect = 1.8
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +1
Query: 142 DLHLTTINNEASLQHFSN*ATSSMHFSCLAFSLI 243
+LHL E + N T++ +SCL L+
Sbjct: 203 NLHLPRFTLEKFFTDYCNSKTNTGEYSCLKVDLL 236
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 21.4 bits (43), Expect = 1.8
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +1
Query: 142 DLHLTTINNEASLQHFSN*ATSSMHFSCLAFSLI 243
+LHL E + N T++ +SCL L+
Sbjct: 203 NLHLPRFTLEKFFTDYCNSKTNTGEYSCLKVDLL 236
>AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 21.4 bits (43), Expect = 1.8
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = -2
Query: 113 SNWYNNEEFKKI 78
+N+YNN +KK+
Sbjct: 315 NNYYNNNNYKKL 326
>DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 20.6 bits (41), Expect = 3.1
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = -2
Query: 104 YNNEEFKKICTEEYLK 57
YNN +KK+ Y K
Sbjct: 91 YNNNNYKKLYCNNYKK 106
>DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 20.6 bits (41), Expect = 3.1
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = -2
Query: 104 YNNEEFKKICTEEYLK 57
YNN +KK+ Y K
Sbjct: 91 YNNNNYKKLYCNNYKK 106
>DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 20.6 bits (41), Expect = 3.1
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = -2
Query: 104 YNNEEFKKICTEEYLK 57
YNN +KK+ Y K
Sbjct: 91 YNNNNYKKLYCNNYRK 106
>DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein.
Length = 828
Score = 20.2 bits (40), Expect = 4.2
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +1
Query: 94 SLLYQFDRQSFKAALGDLHLTTINNEASLQHFSN 195
+L+Y R+ +ALG H + + LQ ++N
Sbjct: 556 TLIYPIIRRKLGSALGGWHPSDRSARLMLQPWAN 589
>DQ325130-1|ABD14144.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 20.2 bits (40), Expect = 4.2
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Frame = -2
Query: 197 QFEKCCKDASLLMVVKCRSPNAALKDCLSNWYN-----NEEFKKIC 75
++ K K+ S + RS + LSN YN N +K++C
Sbjct: 58 KYRKTSKERSRDRTERERSKEPKIISSLSNNYNYSNYNNNNYKQLC 103
>DQ325129-1|ABD14143.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 20.2 bits (40), Expect = 4.2
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Frame = -2
Query: 197 QFEKCCKDASLLMVVKCRSPNAALKDCLSNWYN-----NEEFKKIC 75
++ K K+ S + RS + LSN YN N +K++C
Sbjct: 58 KYRKTSKERSRDRTERERSKEPKIISSLSNNYNYSNYNNNNYKQLC 103
>DQ325128-1|ABD14142.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 20.2 bits (40), Expect = 4.2
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Frame = -2
Query: 197 QFEKCCKDASLLMVVKCRSPNAALKDCLSNWYN-----NEEFKKIC 75
++ K K+ S + RS + LSN YN N +K++C
Sbjct: 58 KYRKTSKERSRDRTERERSKEPKIISSLSNNYNYSNYNNNNYKQLC 103
>DQ325127-1|ABD14141.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 20.2 bits (40), Expect = 4.2
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Frame = -2
Query: 197 QFEKCCKDASLLMVVKCRSPNAALKDCLSNWYN-----NEEFKKIC 75
++ K K+ S + RS + LSN YN N +K++C
Sbjct: 58 KYRKTSKERSRDRTERERSKEPKIISSLSNNYNYSNYNNNNYKQLC 103
>DQ325126-1|ABD14140.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 20.2 bits (40), Expect = 4.2
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Frame = -2
Query: 197 QFEKCCKDASLLMVVKCRSPNAALKDCLSNWYN-----NEEFKKIC 75
++ K K+ S + RS + LSN YN N +K++C
Sbjct: 58 KYRKTSKERSRDRTERERSKEPKIISSLSNNYNYSNYNNNNYKQLC 103
>DQ325125-1|ABD14139.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 20.2 bits (40), Expect = 4.2
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Frame = -2
Query: 197 QFEKCCKDASLLMVVKCRSPNAALKDCLSNWYN-----NEEFKKIC 75
++ K K+ S + RS + LSN YN N +K++C
Sbjct: 58 KYRKTSKERSRDRTERERSKEPKIISSLSNNYNYSNYNNNNYKQLC 103
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 20.2 bits (40), Expect = 4.2
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2
Query: 98 NEEFKKICTEEY 63
NEE+ CTE Y
Sbjct: 225 NEEYYPCCTEPY 236
>DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like receptor
2 protein.
Length = 581
Score = 19.8 bits (39), Expect = 5.5
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = -2
Query: 128 LKDCLSNWYNNEEFKKICTEE 66
L D N NN E+K+ + E
Sbjct: 440 LSDSTMNKINNHEYKRSVSRE 460
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 19.8 bits (39), Expect = 5.5
Identities = 6/11 (54%), Positives = 10/11 (90%)
Frame = -2
Query: 143 SPNAALKDCLS 111
SPN+A++ C+S
Sbjct: 583 SPNSAVRKCMS 593
>L10710-1|AAA27730.1| 382|Apis mellifera hyaluronidase protein.
Length = 382
Score = 19.0 bits (37), Expect = 9.6
Identities = 8/34 (23%), Positives = 17/34 (50%)
Frame = -2
Query: 110 NWYNNEEFKKICTEEYLKERSEYRRTGVKKAIRR 9
NW + + +KK+ E +E + V++ +R
Sbjct: 154 NWASLQPYKKLSVEVVRREHPFWDDQRVEQEAKR 187
>EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase
protein.
Length = 620
Score = 19.0 bits (37), Expect = 9.6
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = -1
Query: 249 KTYQRKG*TRKM 214
+TY+ KG T+KM
Sbjct: 73 QTYEGKGRTKKM 84
>DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 19.0 bits (37), Expect = 9.6
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = -2
Query: 113 SNWYNNEEFKKI 78
+N YNN +KK+
Sbjct: 99 NNNYNNNNYKKL 110
>DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 19.0 bits (37), Expect = 9.6
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = -2
Query: 113 SNWYNNEEFKKI 78
+N YNN +KK+
Sbjct: 99 NNNYNNNNYKKL 110
>DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 19.0 bits (37), Expect = 9.6
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = -2
Query: 113 SNWYNNEEFKKI 78
+N YNN +KK+
Sbjct: 99 NNNYNNNNYKKL 110
>DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 19.0 bits (37), Expect = 9.6
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = -2
Query: 113 SNWYNNEEFKKI 78
+N YNN +KK+
Sbjct: 99 NNNYNNNNYKKL 110
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 19.0 bits (37), Expect = 9.6
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -2
Query: 98 NEEFKKICTEEYL 60
NE+F C E YL
Sbjct: 220 NEKFYTCCDEPYL 232
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 19.0 bits (37), Expect = 9.6
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -2
Query: 98 NEEFKKICTEEYL 60
NE+F C E YL
Sbjct: 220 NEKFYTCCDEPYL 232
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 19.0 bits (37), Expect = 9.6
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -2
Query: 98 NEEFKKICTEEYL 60
NE+F C E YL
Sbjct: 216 NEKFYTCCDEPYL 228
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 19.0 bits (37), Expect = 9.6
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +1
Query: 121 SFKAALGDLHLTTINN 168
+ +AALGD ++ +NN
Sbjct: 616 NLQAALGDSNMGFLNN 631
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,926
Number of Sequences: 438
Number of extensions: 956
Number of successful extensions: 29
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used: 4527252
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)
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