Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11n22
         (829 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC016742-1|AAH16742.1|  199|Homo sapiens DnaJ (Hsp40) homolog, s...    25   2.1  
AF368276-1|AAK60571.1|  199|Homo sapiens beta cysteine string pr...    25   2.1  

>BC016742-1|AAH16742.1|  199|Homo sapiens DnaJ (Hsp40) homolog,
           subfamily C, member 5 beta protein.
          Length = 199

 Score = 24.6 bits (51), Expect(3) = 2.1
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1

Query: 676 YCCSTCCCVN 647
           +CC  CCC N
Sbjct: 125 FCCCLCCCCN 134



 Score = 22.6 bits (46), Expect(3) = 2.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 673 CCSTCCCVNDVIESS 629
           CC  CCC +   ESS
Sbjct: 131 CCCNCCCGHCRPESS 145



 Score = 22.2 bits (45), Expect(3) = 2.1
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -1

Query: 739 SSPGASAXXVINDGGIGGSKTYCCSTCCC 653
           SS  A A  VI  G + G    CC  CCC
Sbjct: 106 SSWWAKALFVIV-GLLTGCYFCCCLCCCC 133


>AF368276-1|AAK60571.1|  199|Homo sapiens beta cysteine string
           protein protein.
          Length = 199

 Score = 24.6 bits (51), Expect(3) = 2.1
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1

Query: 676 YCCSTCCCVN 647
           +CC  CCC N
Sbjct: 125 FCCCLCCCCN 134



 Score = 22.6 bits (46), Expect(3) = 2.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 673 CCSTCCCVNDVIESS 629
           CC  CCC +   ESS
Sbjct: 131 CCCNCCCGHCRPESS 145



 Score = 22.2 bits (45), Expect(3) = 2.1
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -1

Query: 739 SSPGASAXXVINDGGIGGSKTYCCSTCCC 653
           SS  A A  VI  G + G    CC  CCC
Sbjct: 106 SSWWAKALFVIV-GLLTGCYFCCCLCCCC 133


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,619,387
Number of Sequences: 237096
Number of extensions: 1544784
Number of successful extensions: 3969
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3937
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10370898348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)