Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11n07
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           22   4.5  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           22   4.5  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   5.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   5.9  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   7.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   7.8  

>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 494 QDYVGADYETPLGEHPRNRTIQ 429
           Q Y  A  +TPL E P N+  Q
Sbjct: 62  QRYFTAFMDTPLNELPANKRFQ 83


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 494 QDYVGADYETPLGEHPRNRTIQ 429
           Q Y  A  +TPL E P N+  Q
Sbjct: 62  QRYFTAFMDTPLNELPANKRFQ 83


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 129 YGSRYEDIWNEYGI 88
           YG R+E++  +YGI
Sbjct: 57  YGLRFEEVSEKYGI 70


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = +2

Query: 464 EFRNQHPHNPDKEK*VQRESRQRGSFVYPVHLMF 565
           +   QHPH   ++   Q +++Q+    +  H+M+
Sbjct: 171 QMHTQHPHMQPQQGQHQSQAQQQHLQAHEQHMMY 204


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
 Frame = -3

Query: 616 PDGLALAGEAKMCIWMHE-HQVD 551
           PDGL L  +  MC+     H +D
Sbjct: 65  PDGLKLLSDGLMCVEKDSIHSID 87


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/38 (31%), Positives = 14/38 (36%)
 Frame = -2

Query: 575 MDARTSGGLDTQSSRVGGTRAELIFPCQDYVGADYETP 462
           MD    GG       VGGT A ++           ETP
Sbjct: 1   MDTTNGGGSSAGVGVVGGTIASVVAGAASLTLVKAETP 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,486
Number of Sequences: 438
Number of extensions: 4151
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)