Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11m24
(722 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 25 0.72
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 25 0.72
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 24 1.3
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 24 1.3
DQ257631-1|ABB82366.1| 424|Apis mellifera yellow e3-like protei... 23 3.9
AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. 22 5.1
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 22 6.7
DQ232888-1|ABB36783.1| 499|Apis mellifera cytochrome P450 monoo... 21 8.9
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 21 8.9
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 25.0 bits (52), Expect = 0.72
Identities = 22/68 (32%), Positives = 29/68 (42%)
Frame = +3
Query: 429 PLAVYNSSTLPSKLFPYQANIYIMNSFCFLFISVFTIYPGSDSTVNPSLGQVTLFDLP*L 608
P V+N TL K Y N+ I+ F+SV Y SDS SL L L
Sbjct: 224 PDIVFNI-TLRRKTLFYTVNL-IIPCVGISFLSVLVFYLPSDSGEKVSLSISILLSLTVF 281
Query: 609 FIYLIMVV 632
F+ L ++
Sbjct: 282 FLLLAEII 289
Score = 24.2 bits (50), Expect = 1.3
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 30 FCLISITLNYIATPII*NVNFINP 101
F ++ +TL+ + T + NVNF +P
Sbjct: 305 FTMVLVTLSVVVTIAVLNVNFRSP 328
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 25.0 bits (52), Expect = 0.72
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 325 INQTIYRQYDFIVLYNSERSCLSMYCY 405
+N+ +Y+Q D+IV +S S S + Y
Sbjct: 938 VNKKVYKQNDYIVDESSSSSFYSSFLY 964
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.2 bits (50), Expect = 1.3
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +3
Query: 453 TLPSKLFPYQANIYIMNSFCFLFISVFTIYPGSDSTVNPSLGQVTLFDLP*LFIYLIMVV 632
T+ K Y NI I+ F++V T Y SDS +L L L F+ ++ ++
Sbjct: 239 TMRRKTLFYTVNI-IIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEII 297
Score = 21.8 bits (44), Expect = 6.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +2
Query: 470 IPVSGKHLYHEQLLFPLYICV 532
+P+ GK+L +L + ICV
Sbjct: 304 VPLLGKYLIFAMILVSISICV 324
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.2 bits (50), Expect = 1.3
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +3
Query: 453 TLPSKLFPYQANIYIMNSFCFLFISVFTIYPGSDSTVNPSLGQVTLFDLP*LFIYLIMVV 632
T+ K Y NI I+ F++V T Y SDS +L L L F+ ++ ++
Sbjct: 239 TMRRKTLFYTVNI-IIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEII 297
Score = 21.8 bits (44), Expect = 6.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +2
Query: 470 IPVSGKHLYHEQLLFPLYICV 532
+P+ GK+L +L + ICV
Sbjct: 304 VPLLGKYLIFAMILVSISICV 324
>DQ257631-1|ABB82366.1| 424|Apis mellifera yellow e3-like protein
protein.
Length = 424
Score = 22.6 bits (46), Expect = 3.9
Identities = 6/24 (25%), Positives = 14/24 (58%)
Frame = -3
Query: 486 LPDTGIACWEAYYYYKQPGASLSL 415
L D I CW + ++++ G ++ +
Sbjct: 325 LSDLAIGCWNSEHFFEYGGNNIEI 348
>AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein.
Length = 996
Score = 22.2 bits (45), Expect = 5.1
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = -3
Query: 474 GIACWEAYYYYKQP 433
GI CWE Y ++P
Sbjct: 825 GIVCWEVMSYGERP 838
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 21.8 bits (44), Expect = 6.7
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +3
Query: 420 TVTPLAVYNSSTLPSKLFPYQANIYIMNSFCFLFISV 530
T+T ++ S+LP + +IY++ F F+F ++
Sbjct: 283 TMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAAL 319
>DQ232888-1|ABB36783.1| 499|Apis mellifera cytochrome P450
monooxygenase protein.
Length = 499
Score = 21.4 bits (43), Expect = 8.9
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 133 IMLKYISNYNFNQTR 177
+M K IS+Y FN T+
Sbjct: 373 LMRKAISDYTFNDTK 387
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.9
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = -2
Query: 430 GVTVFKILYNNTWR 389
G+ V ++ YN WR
Sbjct: 76 GIRVIRVPYNRVWR 89
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,174
Number of Sequences: 438
Number of extensions: 3357
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -