Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11m23
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    35   0.013
SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr 3|||...    27   1.9  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    27   2.6  
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    26   5.9  
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    25   7.8  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    25   7.8  
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom...    25   7.8  

>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 34.7 bits (76), Expect = 0.013
 Identities = 15/43 (34%), Positives = 29/43 (67%)
 Frame = -2

Query: 608 LQSLQEQYDALLQMYGEKEEELAELRLDLQDVTALYKQQLDEL 480
           LQ+L++++ + L    +K +++ EL LD++D+  LY  Q+D L
Sbjct: 501 LQNLEKEHASTLVTLKQKSDKVFELELDIKDMRELYVSQIDIL 543


>SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 319

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 608 LQSLQEQYDALLQMYGEKEEELAELRLDLQDVTALYKQ 495
           LQ L+++ D LLQ +    E L +    L D+T L  +
Sbjct: 217 LQELEQENDVLLQEFEHTMERLRDTGKSLADITRLQSE 254


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = -2

Query: 629 LQHALDDLQSLQEQYDALLQMYGEKEEELAELRLDLQDVTALYKQQLDE 483
           ++  ++ L SLQEQ +   +   E+EE+L     +L ++  L ++Q  +
Sbjct: 483 MKETVNKLTSLQEQNNEFDRQLKEQEEDLQNKEEELTELRKLLREQTQD 531


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 955

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
 Frame = -2

Query: 629  LQHALDDLQSL---QEQYDALLQMYGEK--EEELAELRLDLQDVTALYKQQL 489
            + + LD L ++   QE+ +  L  + +     E+  LR  LQD TA+Y++++
Sbjct: 893  MSNVLDQLPAMTIGQEEREKFLANFSKHCTSSEMPRLRAHLQDWTAMYRRRV 944


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +2

Query: 134 RMAKLRNGTDRGSFRDLSQYNVTYSTTRAVTWTLTELE 247
           R   L+  + + S RD  QY  T+      +WT+ + E
Sbjct: 214 RYNSLQEASRKQSERDRRQYQETFKNQSIASWTIIDQE 251


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -1

Query: 261 IHFLISNSVSVQVTARVVE*VTLY*LKSLNDPRSVPFRSFAIRL*IYHVHK 109
           I F+   +V + +  ++V    LY L+  NDP+  P R    +  ++ + K
Sbjct: 719 ITFMFEFAVFISMVRKIVRPGVLYFLRDPNDPQFHPIREILEKPMLFQLKK 769


>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 420

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 599 LQEQYDALLQMYGEKEEELAELRLDLQDVTALYKQQLDELV 477
           L+E     L  + E  E++    + L+DV A   QQL EL+
Sbjct: 162 LEEDIRLALYKFEESTEQVKNRMIALKDVEADQYQQLTELI 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,835,102
Number of Sequences: 5004
Number of extensions: 33631
Number of successful extensions: 88
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)