Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11m22
(662 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 192 5e-50
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 100 4e-22
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 97 2e-21
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 91 1e-19
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 91 1e-19
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc... 72 6e-14
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 68 1e-12
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 32 0.085
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 27 2.4
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 7.4
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 25 9.7
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 25 9.7
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 25 9.7
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 192 bits (467), Expect = 5e-50
Identities = 90/177 (50%), Positives = 131/177 (74%), Gaps = 1/177 (0%)
Frame = -1
Query: 584 TNCEENMSLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQ 405
+N ++ +D+HV +AFAGL ADARILI++A++E Q+HKL + DPV++EY+TRY+AG++Q
Sbjct: 58 SNFQKIAMVDNHVCLAFAGLNADARILIDKARVEAQNHKLNLADPVSIEYLTRYVAGVQQ 117
Query: 404 KYTQSNGRRPFGISCLIGGFDY-DGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKN 228
KYTQS G RPFG+S LI GFD D +P ++QTEP+GIY WKA A GR++K RE+LEKN
Sbjct: 118 KYTQSGGVRPFGVSTLIAGFDVGDNTPRVYQTEPAGIYNAWKATAIGRASKAAREYLEKN 177
Query: 227 YTADEVATENGAVKLAIRALLEVVQSGQKNLEIAVMRRGQPMQMLDLDTINSYVSVI 57
+ E + + + LA+ +LLEVVQ+ N+E+A+M G+ ++ L D I++ V I
Sbjct: 178 W--KEGLSRDETIHLAVSSLLEVVQTASGNIELAIMDPGKDVEFLHSDKIDTIVKEI 232
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 99.5 bits (237), Expect = 4e-22
Identities = 60/163 (36%), Positives = 97/163 (59%), Gaps = 4/163 (2%)
Frame = -1
Query: 596 IARRTNCEENMSLDDHVVMAFAGLTADARILINRAQIECQS--HKLTVEDPVTLEYITRY 423
+A + E+ ++ + M ++G+ D R+L+++++ Q+ K+ E P T + + +
Sbjct: 55 LAIGASLEKVCAITPDIGMVYSGMGPDFRVLVDKSRKVAQTTYKKIYNEYPPT-KILVQE 113
Query: 422 IAGLKQKYTQSNGRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVRE 243
IA + Q+ TQS G RPFG+S L+ G D G P L+Q +PSG Y+ WKA A G+S+ +
Sbjct: 114 IASVMQESTQSGGVRPFGVSLLVAGMDEKG-PSLYQVDPSGTYFAWKATAIGKSSTAAKT 172
Query: 242 FLEKNYTADEVATENGAVKLAIRALLEVVQS--GQKNLEIAVM 120
FLEK Y DE+ ++ AV AI AL E + + N+EIAV+
Sbjct: 173 FLEKRYN-DELELDD-AVHTAILALKETFEGELTEDNIEIAVV 213
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 97.5 bits (232), Expect = 2e-21
Identities = 53/149 (35%), Positives = 84/149 (56%)
Frame = -1
Query: 596 IARRTNCEENMSLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIA 417
+ + + E+ + D+++ A AGLTADA ILIN A+ Q + T + + E + R +
Sbjct: 56 LEQEESAEKLYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVC 115
Query: 416 GLKQKYTQSNGRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFL 237
LKQ YTQ G RPFG+S L G+D+ LFQ+ PSG Y W+AN+ G ++ +V+ +
Sbjct: 116 DLKQGYTQYGGLRPFGVSFLYAGWDHIRGYQLFQSNPSGNYGSWQANSIGGNSTSVQSLM 175
Query: 236 EKNYTADEVATENGAVKLAIRALLEVVQS 150
+ Y D E A +A++ L + + S
Sbjct: 176 RQEYKDDINLDEASA--MAVKFLSKTLDS 202
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 91.5 bits (217), Expect = 1e-19
Identities = 51/158 (32%), Positives = 87/158 (55%), Gaps = 8/158 (5%)
Frame = -1
Query: 575 EENMSLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYT 396
E+ +D H+ A +GLTADAR +I A+++ Q+H+ T ++P +E T+ I L ++
Sbjct: 65 EKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLALRFG 124
Query: 395 QSNG------RRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLE 234
+ RPFG++ LI G D G P L+ +EPSG Y+ ++A A G ++ + L
Sbjct: 125 EGEDGEERIMSRPFGVALLIAGIDEHG-PQLYHSEPSGTYFRYEAKAIGSGSEPAKSELV 183
Query: 233 KNYTADEVATENGAVKLAIRALLEVVQS--GQKNLEIA 126
K + D E A L ++ L +V++ KN+++A
Sbjct: 184 KEFHKDMTLEE--AEVLILKVLRQVMEEKLDSKNVQLA 219
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 91.5 bits (217), Expect = 1e-19
Identities = 49/161 (30%), Positives = 86/161 (53%), Gaps = 4/161 (2%)
Frame = -1
Query: 560 LDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGR 381
+DDH+ +A AGL DAR+L N + E S K P+ + + +A Q TQ GR
Sbjct: 66 IDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINTQEYGR 125
Query: 380 RPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTADEVATE 201
RP+G+ L+ G+D G PHL + +PSG+ E+ + G +++ R ++E+N ++
Sbjct: 126 RPYGVGFLVIGYDESG-PHLLEFQPSGLVLEYLGTSMGSRSQSARTYIERNLDTFPDSSR 184
Query: 200 NGAVKLAIRALLEVVQSGQ----KNLEIAVMRRGQPMQMLD 90
+ A+RAL + + Q +N+ I+V+ + + + D
Sbjct: 185 EELILSALRALRDTLSKDQELTEENVSISVIGKDEKYTLYD 225
>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 72.1 bits (169), Expect = 6e-14
Identities = 42/161 (26%), Positives = 81/161 (50%), Gaps = 3/161 (1%)
Frame = -1
Query: 530 GLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIG 351
G ADAR ++RA+ E + P+ + + + +A + Q TQ RP G++ +
Sbjct: 80 GSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIAQVSTQRAAMRPLGVAMTLV 139
Query: 350 GFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTADEVATE-NGAVKLAIR 174
D + P LF+ +P+G Y +KA + G +LEK + D + + V+ I+
Sbjct: 140 AVDDEIGPSLFKLDPAGFYIGYKATSAGPKQTETINWLEKRFKKDGIPSNLTDTVETGIQ 199
Query: 173 ALLEVVQSGQKN--LEIAVMRRGQPMQMLDLDTINSYVSVI 57
AL+ + + K+ L+I V+ +P ++L ++ I +++ I
Sbjct: 200 ALMSSLSTDFKSTELQIGVVEDDKPFRVLSVEEIEAHLQSI 240
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 68.1 bits (159), Expect = 1e-12
Identities = 40/133 (30%), Positives = 68/133 (51%), Gaps = 1/133 (0%)
Frame = -1
Query: 563 SLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNG 384
S+D H+ +A G D + ++ RA+ E S + P+ I + Q +T +
Sbjct: 68 SVDRHIGIATTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYVQLFTCYSS 127
Query: 383 RRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEK-NYTADEVA 207
RPFG+ + +D +G PHL+ EP+G+Y+ + A G+ + R LEK N+++ ++
Sbjct: 128 VRPFGVMSFVATYDSEG-PHLYMVEPNGVYWGYNGAAAGKGRQVARNELEKLNFSSLKM- 185
Query: 206 TENGAVKLAIRAL 168
AVK A R L
Sbjct: 186 --KDAVKEAARIL 196
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 31.9 bits (69), Expect = 0.085
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 2/109 (1%)
Frame = -1
Query: 554 DHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRR- 378
D +V+ +G ADA L+ R Q + E ++ + + L G+R
Sbjct: 52 DDLVIGASGFEADALALVKRIQQRIDLYHDNHERKMSAQSCACMVRTLLY------GKRF 105
Query: 377 -PFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLE 234
P+ + + G D +G ++ +P G Y A G +A + FL+
Sbjct: 106 FPYYVYTTVAGIDKEGKGEIYSFDPVGSYEREWCRAGGSAANFITPFLD 154
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 539 PLRRDHPKTYFPHSSFFLQFSNR 607
PL H K Y P SF +F+NR
Sbjct: 318 PLESSHAKPYRPFGSFVSRFTNR 340
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 491 VHGLLIYERLLSIRQMPLRRDHPKTYFPHSSFFL 592
++ LL ++ +L + + HPKT PH +F L
Sbjct: 2047 LNSLLEHKGVLIVNEKTTEDGHPKTIKPHPNFRL 2080
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 336 IIVESSYQTRNTKWSTTIALSIFLFETCYVSCNILQCYWILD 461
II S Y+T N W++TI ++CN+LQ + +D
Sbjct: 549 IIYPSLYKTANEHWNSTIQA---------IACNVLQIFVDMD 581
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 25.0 bits (52), Expect = 9.7
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 399 IFLFETCYVSCNILQC 446
I LF+TCY+ C + C
Sbjct: 567 IVLFDTCYMVCTYIVC 582
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -1
Query: 332 SPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTA 219
SP LF I + NAT S +V FL+K T+
Sbjct: 247 SPKLFSPSKQAIMGTRQPNATSGSPLSVTPFLQKTSTS 284
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,474,663
Number of Sequences: 5004
Number of extensions: 52464
Number of successful extensions: 157
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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