Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11m22
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.0  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   4.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   4.5  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   4.5  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   4.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   4.5  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   6.0  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   7.9  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   7.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 290  HNIYQKVQFGTSVVNHHSRIL-LSNTKYQMVD 382
            +N+Y +V  G   +NH  R L   NT ++  D
Sbjct: 1247 YNLYTRVVDGREELNHGKRTLPAKNTYFEATD 1278


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 290  HNIYQKVQFGTSVVNHHSRIL-LSNTKYQMVD 382
            +N+Y +V  G   +NH  R L   NT ++  D
Sbjct: 1243 YNLYTRVVDGREELNHGKRTLPAKNTYFEATD 1274


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 534 KCHYDVIIQRHIFLTVRSSCNLATDFF 614
           + H+   I R I LT+ +SC +   +F
Sbjct: 119 RIHHSGSITRSIRLTITASCPMNLQYF 145


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 534 KCHYDVIIQRHIFLTVRSSCNLATDFF 614
           + H+   I R I LT+ +SC +   +F
Sbjct: 119 RIHHSGSITRSIRLTITASCPMNLQYF 145


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 281 LSIHNIYQKVQFGTSVVNHHSRILLSNTKYQMVDDHC 391
           L++ N  QKV +G    + + RIL++N    + +  C
Sbjct: 377 LAVSNRIQKVIYGFDFNDVNFRILIANVNDLIKNTRC 413


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 377 PFGISCLIGG 348
           PFGI CLI G
Sbjct: 288 PFGIMCLIAG 297


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 534 KCHYDVIIQRHIFLTVRSSCNLATDFF 614
           + H+   I R I LT+ +SC +   +F
Sbjct: 58  RIHHSGSITRSIRLTITASCPMNLQYF 84


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 356 IGGFDYDGSPHLFQT 312
           I GF  D  PHLF++
Sbjct: 224 IDGFRIDAVPHLFES 238


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 102 HWLTSSHYSNF*VLLARLYYF 164
           +W++SS Y     +  +LYYF
Sbjct: 243 YWMSSSQYHMPKEIRGQLYYF 263


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 102 HWLTSSHYSNF*VLLARLYYF 164
           +W++SS Y     +  +LYYF
Sbjct: 243 YWMSSSQYHMPKEIRGQLYYF 263


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,231
Number of Sequences: 438
Number of extensions: 3769
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)