Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11m08
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.6  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   3.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   4.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   4.5  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +3

Query: 411 SMHLI*SIIDISGDRPPCTHRTVSSINAA 497
           +++ +  II+ +GD+PP T+    ++ A+
Sbjct: 149 TLYKLDEIIERNGDKPPLTYHQFQTVVAS 177


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 196 LVTVWSAPNYCYRCGNVASILEF 128
           L  VW  P  CY+ G  A ++ +
Sbjct: 1   LANVWRFPYLCYKNGGGAFLIPY 23


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 607 ETCQITKVYGFYDECLNKYGNANA 536
           E+  I K+Y ++D+C     NA A
Sbjct: 454 ESVNIDKLYTYFDKCDTLINNAVA 477


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 607 ETCQITKVYGFYDECLNKYGNANA 536
           E+  I K+Y ++D+C     NA A
Sbjct: 454 ESVNIDKLYTYFDKCDTLINNAVA 477


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,672
Number of Sequences: 438
Number of extensions: 3815
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)