Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11m07
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    28   1.2  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   2.1  
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    26   4.9  
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    26   4.9  
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    26   4.9  
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb...    25   6.5  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    25   8.6  

>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 144 FWINLNSFFLNTICLAFTAFINL 76
           FWIN+NS    T+ +A   F+N+
Sbjct: 189 FWININSGIWITVFIALLCFVNM 211


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 461 PKLAKSVQPYSSFSETNEQQFIF 393
           P+L +S++PY S  + + Q+FIF
Sbjct: 920 PQLVRSLKPYISVLKQDHQEFIF 942


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 610 YKINFKPNKGIRPTGYTSKEKQNCYFY 530
           YK++F PN  +R T   S+E    + +
Sbjct: 615 YKLDFMPNGSVRVTSTYSREDNTAFIF 641


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 144 FWINLNSFFLNTICLAFTAFINL 76
           +W NLNS    T+ + F  FIN+
Sbjct: 189 YWTNLNSGIWVTVFIVFLFFINI 211


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 120 FLNTICLAFTAFINLSIINVTRNGY 46
           F     L FT F+N S+I + RN Y
Sbjct: 449 FFTVSSLFFTRFVNESLIPILRNDY 473


>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 497 FKPSLDFTNHSRPKLAKSVQPYSSFSETNE 408
           F PS +++++   +L  S  PY+  S  NE
Sbjct: 205 FHPSTEYSDYETAELLDSSLPYAIISSVNE 234


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -3

Query: 186 LFFVFIKNYNQNFCFWINLNSFFLNTICLAFTAFINL 76
           LFF  +K + +    + +L+  F++  C   T+++NL
Sbjct: 389 LFFKVLKIHRRPIIVFGSLSIIFIHIYCFKITSWVNL 425


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,297,292
Number of Sequences: 5004
Number of extensions: 43607
Number of successful extensions: 108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)