Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11m05
(291 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein S28|Schizosa... 72 2e-14
SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein S28|Sc... 72 2e-14
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 27 0.42
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo... 26 1.3
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 24 3.9
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 24 5.2
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 24 5.2
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ... 23 6.9
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 23 6.9
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 23 9.1
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces... 23 9.1
>SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein
S28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 68
Score = 71.7 bits (168), Expect = 2e-14
Identities = 33/45 (73%), Positives = 40/45 (88%)
Frame = -3
Query: 265 ARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 131
A+V+KVLGRTGS+G TQV+VEF+ +TSR IIRNVKGPVR+ DIL
Sbjct: 11 AKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55
>SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein
S28|Schizosaccharomyces pombe|chr 3|||Manual
Length = 68
Score = 71.7 bits (168), Expect = 2e-14
Identities = 33/45 (73%), Positives = 40/45 (88%)
Frame = -3
Query: 265 ARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 131
A+V+KVLGRTGS+G TQV+VEF+ +TSR IIRNVKGPVR+ DIL
Sbjct: 11 AKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 27.5 bits (58), Expect = 0.42
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -1
Query: 204 SSSLGRPAVRSSET*KDPSVTETSSLFLNLNVKL 103
++S+ PAV SSET S+T T S + + +V +
Sbjct: 203 TTSVNSPAVSSSETLTSVSITSTESAYTSSSVDI 236
>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
Agn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 25.8 bits (54), Expect = 1.3
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = -2
Query: 260 CRESAWPYWFSGPVYSSEGRVHWGDQPSDHQK 165
C+ + WPY+ S P +E V+ + + ++K
Sbjct: 172 CKWNCWPYYTSSPTSDAEDLVYIQNSKATNKK 203
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 24.2 bits (50), Expect = 3.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 143 VTDGSFHVSDDLTAGLPNELDLHLSTLAL 229
+T+G D+++ PN DL LS+LAL
Sbjct: 435 ITEGVNPTLDEVSKFNPNNEDLDLSSLAL 463
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 23.8 bits (49), Expect = 5.2
Identities = 12/38 (31%), Positives = 16/38 (42%)
Frame = +2
Query: 161 HVSDDLTAGLPNELDLHLSTLALRTSTAKHFHDTCTKA 274
H D+ L +E D RTS ++H H KA
Sbjct: 437 HQLDEFIENLKSEFDYKGPIARKRTSESRHLHYLMAKA 474
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 23.8 bits (49), Expect = 5.2
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Frame = +2
Query: 92 SQPPSFTFRFKKSEDVS------VTDGSFHVSDDLTAGLPNELDLHLSTLALRTSTAKHF 253
+QPPS +F + ++D S ++ ++DL P E +L + L L ++T
Sbjct: 423 AQPPS-SFEKENNKDTSKLENPDISSSPLSPTEDLFPNDPEEENLFSAALGLNSNTGSQP 481
Query: 254 HDTCTKAGV 280
+T +K +
Sbjct: 482 SETQSKPSI 490
>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 621
Score = 23.4 bits (48), Expect = 6.9
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +2
Query: 200 LDLHLSTLALRTSTAKHFHDTCTKAGV 280
L HL L + ++ K +D C +AG+
Sbjct: 412 LQEHLGPLEVELASVKVLYDNCFQAGI 438
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 23.4 bits (48), Expect = 6.9
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = -2
Query: 260 CRESAWPYWF 231
C E WPYW+
Sbjct: 825 CVEKTWPYWW 834
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 23.0 bits (47), Expect = 9.1
Identities = 7/30 (23%), Positives = 18/30 (60%)
Frame = +2
Query: 161 HVSDDLTAGLPNELDLHLSTLALRTSTAKH 250
H+ ++ ++G+P L++++ L + KH
Sbjct: 548 HLINEESSGIPFNLEVYMKLLTFKKDLLKH 577
>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 500
Score = 23.0 bits (47), Expect = 9.1
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 141 ETSSLFLNLNVKLGGCDR 88
E S +FLN++ K+G DR
Sbjct: 16 ELSDIFLNVSKKIGQMDR 33
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,116,627
Number of Sequences: 5004
Number of extensions: 17342
Number of successful extensions: 41
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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