Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11m03
(585 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 311 6e-86
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 308 5e-85
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 122 4e-29
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 61 1e-10
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.12
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.16
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 0.87
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 28 0.87
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 28 0.87
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.0
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 3.5
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 3.5
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 26 4.7
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 6.2
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 25 8.1
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 25 8.1
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 311 bits (763), Expect = 6e-86
Identities = 136/172 (79%), Positives = 155/172 (90%)
Frame = -3
Query: 583 PLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKD 404
PLVTY+P++SA KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+D
Sbjct: 272 PLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRD 331
Query: 403 VNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEA 224
V AA+ +IK++RTIQFVDWCPTGFK+GI Y+PP VPG +AKV RAVCMLSNTT+IAEA
Sbjct: 332 VQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEA 391
Query: 223 WARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 68
W+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 392 WSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 443
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 308 bits (755), Expect = 5e-85
Identities = 136/172 (79%), Positives = 153/172 (88%)
Frame = -3
Query: 583 PLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKD 404
PLVTYAP++SA KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+D
Sbjct: 268 PLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRD 327
Query: 403 VNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEA 224
V AA+ TIK KRTIQFVDWCPTGFK+GI +PP + G ++AKV RAVCMLSNTT+IAEA
Sbjct: 328 VQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEA 387
Query: 223 WARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 68
W+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 388 WSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 439
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 122 bits (294), Expect = 4e-29
Identities = 62/173 (35%), Positives = 99/173 (57%), Gaps = 3/173 (1%)
Frame = -3
Query: 580 LVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDV 401
+V +AP+ + + + +SV E+T F+ N MV DPRHG+Y+ L+RG V K+V
Sbjct: 267 MVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEV 326
Query: 400 NAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAW 221
+ I +++TK + FV+W P + PP DL + + + N+T+I E +
Sbjct: 327 DEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPK-----DL---KMSATFIGNSTSIQEIF 378
Query: 220 ARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEEVGMD 71
RL +F M+ ++AF+HWY GEGM+E EF+EA DL + + Y+E G+D
Sbjct: 379 RRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGID 431
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 61.3 bits (142), Expect = 1e-10
Identities = 38/151 (25%), Positives = 76/151 (50%), Gaps = 4/151 (2%)
Frame = -3
Query: 526 SVAEITNACFEPANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 350
+V ++ P NQMV +P + +++ + +G+ P DV+ ++ I+ +R F+
Sbjct: 291 TVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIP 350
Query: 349 WCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFV 170
W P +V ++ + P + ++ + ML+N T+IA + R ++D + + AF+
Sbjct: 351 WGPASIQVALSKKSPYIKTNHRVSGL-----MLANHTSIASLFKRTLDQYDRLRKRNAFL 405
Query: 169 HWYVGEGMEE---GEFSEAREDLAALEKDYE 86
Y E + E EF +R+ +A L +YE
Sbjct: 406 EQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 31.1 bits (67), Expect = 0.12
Identities = 24/89 (26%), Positives = 33/89 (37%)
Frame = -1
Query: 558 SLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPS 379
S+P+ P P S + P P + S VV P + RP++P
Sbjct: 513 SVPQPPAAPVVPEAPSVHQPPAAPV-----APEVPSAPQRPAAPVVPEAPSVPQRPAVPV 567
Query: 378 KPSVLSNSSTGVQPVSRSVSTTSHPPWCP 292
P LS V PV+ V + PP P
Sbjct: 568 VPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
Score = 25.4 bits (53), Expect = 6.2
Identities = 23/90 (25%), Positives = 31/90 (34%)
Frame = -1
Query: 558 SLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPS 379
S+P+RP + P S P P + +A S P+ P P
Sbjct: 558 SVPQRPAVPVVPEALSVPQPPVAPVA--PEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPE 615
Query: 378 KPSVLSNSSTGVQPVSRSVSTTSHPPWCPE 289
PSV + V P + SV P PE
Sbjct: 616 VPSVPQRPAVPVVPEAPSVPQPPAAPVVPE 645
Score = 25.0 bits (52), Expect = 8.1
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = -1
Query: 426 VVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 292
VV P + RP++P P S PV V + PP P
Sbjct: 642 VVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVP 686
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 30.7 bits (66), Expect = 0.16
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Frame = -1
Query: 570 TRQSSLPRRPTM--NSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*T 397
T S+ P PT+ S +P + T+ ++ + +TPV ++ CT TS P T
Sbjct: 402 TGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPY--T 459
Query: 396 RPSLPSKPSVLSNSSTGVQPVSRSVSTTSHP 304
+ S P +N +T S TS P
Sbjct: 460 STPVTSTPLTTTNCTTSTSIPYTSTPVTSTP 490
Score = 26.6 bits (56), Expect = 2.7
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = -1
Query: 522 SPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGV 343
+P + T+ ++ + +TPV ++ CT TS P T P S ++ S++
Sbjct: 525 TPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTST-PVTSSNYTISSSTPVTS 583
Query: 342 QPVSRSVSTTS 310
PV+ + TTS
Sbjct: 584 TPVTTTNCTTS 594
Score = 25.4 bits (53), Expect = 6.2
Identities = 22/87 (25%), Positives = 37/87 (42%)
Frame = -1
Query: 570 TRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRP 391
T +S+P T + +P + T+ ++ + +TPV ++ CT TS P T
Sbjct: 428 TTSTSVPYTSTPVT-STPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPY--TST 484
Query: 390 SLPSKPSVLSNSSTGVQPVSRSVSTTS 310
+ S P +N +T S TS
Sbjct: 485 PVTSTPLTTTNCTTSTSVPYTSTPVTS 511
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 0.87
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -3
Query: 514 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 389
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 28.3 bits (60), Expect = 0.87
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +2
Query: 386 SDGRVHILGYDVTTVQHTASHVLAMTGVAFHHLVGGLEACVCDLGDGK 529
S G +LGY ++ A++V+A + V HL+ G D + K
Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK 454
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 28.3 bits (60), Expect = 0.87
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -1
Query: 222 GLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--RRITKKSAWTPLKARVR 49
G+ TS TS T S S++ S+P P W P+ S+ TP+ V
Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207
Query: 48 EPKSTK 31
EP+ TK
Sbjct: 208 EPRFTK 213
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 2.0
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -1
Query: 570 TRQSSLPRRPTMNSFPSPRSQTHASSPPTR 481
T +SS+P P N+ PSP S + AS+ P R
Sbjct: 1251 TPRSSVPS-PHSNASPSPTSSSMASAAPAR 1279
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 26.2 bits (55), Expect = 3.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 564 QSSLPRRPTMNSFPSPRSQTHASSPPTR 481
+ SLPRRP+ +P S T ++ PP +
Sbjct: 738 RGSLPRRPSSALLTNPISITKSNPPPVK 765
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 3.5
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -1
Query: 390 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 304
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 409 WVRRHHGTAYSKPCTCHDGG 468
W R H Y+KPC DGG
Sbjct: 16 WRRDHPFGFYAKPCKSSDGG 35
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 6.2
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -1
Query: 393 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 298
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 476
Score = 25.0 bits (52), Expect = 8.1
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = -1
Query: 411 PRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPP 301
PR LP K VL T + VSR TTS P
Sbjct: 293 PRPLLNSKLPRKTLVLDLDETLIHSVSRGSRTTSGQP 329
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.0 bits (52), Expect = 8.1
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = -1
Query: 471 ATPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 292
+TP ++S A VV+S T + S S ++SS P S SVS W P
Sbjct: 245 STPAVSSA-AASSSAVVSSVVSSATSVAASSTISSATSSSASASPTSSSVSGKRGLAWIP 303
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,473,950
Number of Sequences: 5004
Number of extensions: 53084
Number of successful extensions: 215
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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