Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11m02
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    30   0.36 
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi...    29   0.63 
SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz...    27   3.3  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    27   3.3  
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    27   3.3  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   4.4  

>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -3

Query: 600 FPRLACSNKLFSFIILV*IHS--GTVHVQLLQVQEAIKKRALS 478
           FPR  CSN LF F++ + +    GT   +LL      +K  LS
Sbjct: 703 FPRRICSNSLFYFVLCMQLEESIGTQEQRLLSFLRVYEKNTLS 745


>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = +1

Query: 61  HRFAWR-VSQFVTEGWVSRNNLF--SLVTVLGASYQLRYVQFGDGEQIHQQVLLVRVERA 231
           H F W+ + Q++  G V  N+         L     +RY+ F + E++ ++ L +   R 
Sbjct: 41  HLFPWKYLFQWLNHGPVVTNDFAHREFAFTLPNDAYIRYLSFSNWEELKKEALNLCPSRF 100

Query: 232 LVGPVHFA 255
            VGPV+ A
Sbjct: 101 EVGPVYSA 108


>SPCC1919.03c |||AMP-activated protein kinase beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 298

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = -3

Query: 282 PKMKDWRLPREVDWADQRALYTNQKHLLMNLLAIPKLDIPELITSAEDCYEREKVISA 109
           P ++   L     + + +++  N  H+L+N LA     +  L  SA   Y R+ V +A
Sbjct: 234 PHLEKCILNSNTAYKEDQSVLPNPNHVLLNHLAAANTQLGVLALSATTRYHRKYVTTA 291


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 216  NQKHLLMNLLAIPKLDIPELITSAE 142
            NQ+H L++   IP LD  + +TS E
Sbjct: 1306 NQRHTLISAGRIPNLDFSDSVTSME 1330


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = -3

Query: 276 MKDWRLPREVDWADQRALYTNQKHLLMNLLAIPKLDIP 163
           +K W  P  VD +D  +L+  QKH++ ++ AIP +D P
Sbjct: 429 LKLWGYP--VDESDITSLF--QKHIMSDISAIPWIDEP 462


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -3

Query: 531  VHVQLLQVQEAIKKR--ALSHEVTSKALTPAFLTEIEKQYKNKYLRDIATHAELLVYDW 361
            +   LL   + I+++    + +V S  L P FL E E  Y+ + L  +    ++ +Y W
Sbjct: 1913 LETNLLPASDTIEEKNDVGNKQVNSHILDPGFLKEEECVYEFEQLHGLRKALQVEIYGW 1971


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,539
Number of Sequences: 5004
Number of extensions: 51298
Number of successful extensions: 149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)