Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11m02
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0100 - 11108275-11108535,11110333-11111619                       32   0.37 
09_04_0358 - 16937528-16937587,16938255-16938282,16938305-169383...    30   2.0  
07_01_0431 + 3283252-3283274,3283684-3283819,3285839-3286682,328...    29   2.6  
07_03_0256 - 15875066-15877025,15877292-15877911                       29   4.5  
04_04_1532 - 34187153-34187308,34187426-34187551,34187856-341879...    28   6.0  
01_05_0346 + 21191542-21191783,21191988-21192072,21192159-211924...    28   6.0  
05_06_0096 + 25513535-25514024,25514139-25514236,25514395-255147...    28   7.9  

>01_02_0100 - 11108275-11108535,11110333-11111619
          Length = 515

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = -2

Query: 304 PVYGA*RAQDEGLAFAS--RSGLGRPARALHEPEALADESAR-HPQTG 170
           P +GA  A+ E LA A+    GL R     H+ EA +DESAR  P+ G
Sbjct: 7   PSHGAQAAEAEALAAAADLEQGLTRHLMEYHQSEASSDESARQRPRVG 54


>09_04_0358 -
           16937528-16937587,16938255-16938282,16938305-16938328,
           16938466-16938504,16938834-16938877,16939050-16939097
          Length = 80

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 141 DCYEREKVISAHPAFRYELGYAPGESVTFK 52
           DC   E+++ A PAF+  + +  G++VT K
Sbjct: 46  DCSSNERILCALPAFQVRMRHPRGQAVTMK 75


>07_01_0431 +
           3283252-3283274,3283684-3283819,3285839-3286682,
           3286785-3286856,3286906-3286937,3287020-3287433
          Length = 506

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +1

Query: 103 WVSRNNL-FSLVTVLGASYQLRYVQFGDGEQIHQQVLLVRVERAL 234
           W SR +L F   TVL   + ++     DG+++++++ + RV+  L
Sbjct: 82  WCSRESLVFRFYTVLSMHHHIKRCWTSDGQRLNKELFIERVDSVL 126


>07_03_0256 - 15875066-15877025,15877292-15877911
          Length = 859

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 12/130 (9%)
 Frame = +1

Query: 55  EGHRFAWRVSQFVTEGWVSRNNLFSLVTVLGAS-------YQLRYVQF---GDGEQIHQQ 204
           +G   A RV   + +  VSR+N  + VT++GAS        ++R + F    +G      
Sbjct: 422 DGQVHACRVHDTILDFVVSRSNEENFVTMVGASDLTSTPTGKIRRLSFHKNSEGSVTMPT 481

Query: 205 VLLVRVERALVGPVHFARQTPVLHLGLFTLRILVEVQSLYVLDDHFDFTSSGPVVH-EQL 381
            LL    R+L   +H A Q P L LG + LR+L ++++   L +H D  S G ++    L
Sbjct: 482 YLLRSHVRSLTTFLH-AGQVPPL-LGFYGLRVL-DLENCSGLKNH-DLKSIGRLIQLRYL 537

Query: 382 CMSG-DISQI 408
            + G DIS +
Sbjct: 538 NIKGTDISDL 547


>04_04_1532 -
           34187153-34187308,34187426-34187551,34187856-34187977,
           34188058-34188181,34189671-34189821,34190506-34190720,
           34191142-34191343,34191423-34191597,34191746-34192055,
           34192141-34192356
          Length = 598

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 25/81 (30%), Positives = 37/81 (45%)
 Frame = +1

Query: 214 VRVERALVGPVHFARQTPVLHLGLFTLRILVEVQSLYVLDDHFDFTSSGPVVHEQLCMSG 393
           +++E A +  +   R   +LH  L T  I+V   S  V+D  F F   GP       M  
Sbjct: 224 LKLEIAELKSMFIERAQALLHGDLHTGSIMVTPDSTQVIDPEFAF--YGP-------MGY 274

Query: 394 DISQILVFVLLLNFSQEGRCE 456
           DI   L  ++L  FSQ+G  +
Sbjct: 275 DIGAFLGNLILAYFSQDGHAD 295


>01_05_0346 +
           21191542-21191783,21191988-21192072,21192159-21192422,
           21192518-21192820,21193695-21193799,21193916-21194020,
           21194613-21194712,21195614-21195933,21196183-21196359,
           21196432-21196560,21196592-21196636,21196851-21197078
          Length = 700

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +1

Query: 61  HRFAWRVSQFVTEGWVSRNNLFSLVTVLGASYQLRYVQFGDGEQI 195
           HR  WR+SQF  E       +F L  + G + Q RY+Q  D +Q+
Sbjct: 602 HRSGWRISQFGVEVETPDFWMFKL-DIFGKAIQ-RYIQKPDKKQL 644


>05_06_0096 +
           25513535-25514024,25514139-25514236,25514395-25514783,
           25515485-25515599,25515816-25515917,25516584-25516734,
           25517162-25517250,25517518-25517566,25517723-25517763,
           25517929-25518116,25518285-25518402,25518900-25519079,
           25519172-25519294,25519368-25519455,25519549-25519679,
           25519768-25519866,25520822-25521253
          Length = 960

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 516 LQVQEAIKKRALSHEVTSKALTPAFL-TEIEKQYKNKYLRDI 394
           + V + + +RAL+  +  K   P FL  EI  QY N Y  +I
Sbjct: 178 VNVPDEVGQRALTRALAEKRCIPVFLDEEIVHQYYNGYCNNI 219


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,899,012
Number of Sequences: 37544
Number of extensions: 322179
Number of successful extensions: 820
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)