Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11m02
(683 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC003417-1|AAH03417.1| 355|Homo sapiens NADH dehydrogenase (ubi... 42 0.003
AF087854-1|AAP97164.1| 354|Homo sapiens NADH dehydrogenase prot... 42 0.003
AF087661-1|AAD09755.1| 355|Homo sapiens NADH-ubiquinone oxidore... 42 0.003
AC013469-3|AAY14737.1| 333|Homo sapiens unknown protein. 42 0.003
AF453834-1|AAL50984.1| 429|Homo sapiens NADH dehydrogenase ubiq... 34 0.41
BC110541-1|AAI10542.1| 409|Homo sapiens SLC4A11 protein protein. 30 8.8
BC110540-1|AAI10541.1| 891|Homo sapiens solute carrier family 4... 30 8.8
AL109976-2|CAB90170.4| 918|Homo sapiens solute carrier family 4... 30 8.8
AL109976-1|CAD55941.1| 891|Homo sapiens solute carrier family 4... 30 8.8
AK075303-1|BAC11536.1| 633|Homo sapiens protein ( Homo sapiens ... 30 8.8
AF336127-1|AAK16734.1| 891|Homo sapiens bicarbonate transporter... 30 8.8
>BC003417-1|AAH03417.1| 355|Homo sapiens NADH dehydrogenase
(ubiquinone) 1 alpha subcomplex, 10, 42kDa protein.
Length = 355
Score = 41.5 bits (93), Expect = 0.003
Identities = 25/77 (32%), Positives = 40/77 (51%)
Frame = -3
Query: 531 VHVQLLQVQEAIKKRALSHEVTSKALTPAFLTEIEKQYKNKYLRDIATHAELLVYDWTXX 352
+ V + +VQ I+K+ HE+ +T A+L +IE YK +L +++ E+L Y
Sbjct: 207 IDVPVPEVQRRIQKKGDPHEMK---ITSAYLQDIENAYKKTFLPEMSEKCEVLQYSAREA 263
Query: 351 XXXXXXXEDIERLNFDQ 301
EDIE L FD+
Sbjct: 264 QDSKKVVEDIEYLKFDK 280
>AF087854-1|AAP97164.1| 354|Homo sapiens NADH dehydrogenase
protein.
Length = 354
Score = 41.5 bits (93), Expect = 0.003
Identities = 25/77 (32%), Positives = 40/77 (51%)
Frame = -3
Query: 531 VHVQLLQVQEAIKKRALSHEVTSKALTPAFLTEIEKQYKNKYLRDIATHAELLVYDWTXX 352
+ V + +VQ I+K+ HE+ +T A+L +IE YK +L +++ E+L Y
Sbjct: 206 IDVPVPEVQRRIQKKGDPHEMK---ITSAYLQDIENAYKKTFLPEMSEKCEVLQYSAREA 262
Query: 351 XXXXXXXEDIERLNFDQ 301
EDIE L FD+
Sbjct: 263 QDSKKVVEDIEYLKFDK 279
>AF087661-1|AAD09755.1| 355|Homo sapiens NADH-ubiquinone
oxidoreductase 42 kDa subunit protein.
Length = 355
Score = 41.5 bits (93), Expect = 0.003
Identities = 25/77 (32%), Positives = 40/77 (51%)
Frame = -3
Query: 531 VHVQLLQVQEAIKKRALSHEVTSKALTPAFLTEIEKQYKNKYLRDIATHAELLVYDWTXX 352
+ V + +VQ I+K+ HE+ +T A+L +IE YK +L +++ E+L Y
Sbjct: 207 IDVPVPEVQRRIQKKGDPHEMK---ITSAYLQDIENAYKKTFLPEMSEKCEVLQYSAREA 263
Query: 351 XXXXXXXEDIERLNFDQ 301
EDIE L FD+
Sbjct: 264 QDSKKVVEDIEYLKFDK 280
>AC013469-3|AAY14737.1| 333|Homo sapiens unknown protein.
Length = 333
Score = 41.5 bits (93), Expect = 0.003
Identities = 25/77 (32%), Positives = 40/77 (51%)
Frame = -3
Query: 531 VHVQLLQVQEAIKKRALSHEVTSKALTPAFLTEIEKQYKNKYLRDIATHAELLVYDWTXX 352
+ V + +VQ I+K+ HE+ +T A+L +IE YK +L +++ E+L Y
Sbjct: 207 IDVPVPEVQRRIQKKGDPHEMK---ITSAYLQDIENAYKKTFLPEMSEKCEVLQYSAREA 263
Query: 351 XXXXXXXEDIERLNFDQ 301
EDIE L FD+
Sbjct: 264 QDSKKVVEDIEYLKFDK 280
>AF453834-1|AAL50984.1| 429|Homo sapiens NADH dehydrogenase
ubiquinone 1 alpha subcomplex protein.
Length = 429
Score = 34.3 bits (75), Expect = 0.41
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = -3
Query: 456 LTPAFLTEIEKQYKNKYLRDIATHAELLVYDWTXXXXXXXXXEDIERLNFDQ 301
+T A+L +IE YK +L +++ E+L Y EDIE L FD+
Sbjct: 259 ITSAYLQDIENAYKKTFLPEMSEKCEVLQYSAREAQDSKKVVEDIEYLKFDK 310
>BC110541-1|AAI10542.1| 409|Homo sapiens SLC4A11 protein protein.
Length = 409
Score = 29.9 bits (64), Expect = 8.8
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 181 DGEQIHQQVLLVRVERALVGPVHFARQTPVLHLGLFT-LRIL 303
DG Q+ Q+V L+ E+ P H+ R+ P + FT L++L
Sbjct: 315 DGNQLVQRVALLLKEQTAYPPTHYIRRVPQRKIHYFTGLQVL 356
>BC110540-1|AAI10541.1| 891|Homo sapiens solute carrier family 4,
sodium borate transporter, member 11 protein.
Length = 891
Score = 29.9 bits (64), Expect = 8.8
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 181 DGEQIHQQVLLVRVERALVGPVHFARQTPVLHLGLFT-LRIL 303
DG Q+ Q+V L+ E+ P H+ R+ P + FT L++L
Sbjct: 797 DGNQLVQRVALLLKEQTAYPPTHYIRRVPQRKIHYFTGLQVL 838
>AL109976-2|CAB90170.4| 918|Homo sapiens solute carrier family 4,
sodium bicarbonate transporter-like, member 11 protein.
Length = 918
Score = 29.9 bits (64), Expect = 8.8
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 181 DGEQIHQQVLLVRVERALVGPVHFARQTPVLHLGLFT-LRIL 303
DG Q+ Q+V L+ E+ P H+ R+ P + FT L++L
Sbjct: 824 DGNQLVQRVALLLKEQTAYPPTHYIRRVPQRKIHYFTGLQVL 865
>AL109976-1|CAD55941.1| 891|Homo sapiens solute carrier family 4,
sodium bicarbonate transporter-like, member 11 protein.
Length = 891
Score = 29.9 bits (64), Expect = 8.8
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 181 DGEQIHQQVLLVRVERALVGPVHFARQTPVLHLGLFT-LRIL 303
DG Q+ Q+V L+ E+ P H+ R+ P + FT L++L
Sbjct: 797 DGNQLVQRVALLLKEQTAYPPTHYIRRVPQRKIHYFTGLQVL 838
>AK075303-1|BAC11536.1| 633|Homo sapiens protein ( Homo sapiens
cDNA FLJ90822 fis, clone Y79AA1001426, weakly similar to
ANION EXCHANGE PROTEIN 3. ).
Length = 633
Score = 29.9 bits (64), Expect = 8.8
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 181 DGEQIHQQVLLVRVERALVGPVHFARQTPVLHLGLFT-LRIL 303
DG Q+ Q+V L+ E+ P H+ R+ P + FT L++L
Sbjct: 539 DGNQLVQRVALLLKEQTAYPPTHYIRRVPQRKIHYFTGLQVL 580
>AF336127-1|AAK16734.1| 891|Homo sapiens bicarbonate
transporter-related protein BTR1 protein.
Length = 891
Score = 29.9 bits (64), Expect = 8.8
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 181 DGEQIHQQVLLVRVERALVGPVHFARQTPVLHLGLFT-LRIL 303
DG Q+ Q+V L+ E+ P H+ R+ P + FT L++L
Sbjct: 797 DGNQLVQRVALLLKEQTAYPPTHYIRRVPQRKIHYFTGLQVL 838
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,529,713
Number of Sequences: 237096
Number of extensions: 1804875
Number of successful extensions: 3837
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3837
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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