Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11m02
(683 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY051764-1|AAK93188.1| 407|Drosophila melanogaster LD29280p pro... 129 4e-30
AE014297-3086|AAN13899.1| 407|Drosophila melanogaster CG6343-PB... 129 4e-30
AE014297-3085|AAF55947.1| 407|Drosophila melanogaster CG6343-PA... 129 4e-30
AE014298-1726|AAX52488.1| 1849|Drosophila melanogaster CG1522-PG... 32 0.84
AE014298-1722|AAX52486.1| 1849|Drosophila melanogaster CG1522-PH... 32 0.84
U55776-1|AAC47406.1| 1851|Drosophila melanogaster calcium channe... 30 2.6
AE014298-1728|AAS65325.1| 1851|Drosophila melanogaster CG1522-PF... 30 3.4
AE014298-1724|AAS65323.1| 1851|Drosophila melanogaster CG1522-PE... 30 3.4
>AY051764-1|AAK93188.1| 407|Drosophila melanogaster LD29280p
protein.
Length = 407
Score = 129 bits (311), Expect = 4e-30
Identities = 61/145 (42%), Positives = 90/145 (62%), Gaps = 1/145 (0%)
Frame = -3
Query: 510 VQEAIKKRALSHEVTSKALTPAFLTEIEKQYKNKYLRDIATHAELLVYDWTXXXXXXXXX 331
V++ IK R + +EV SK + A+L+++E+ YK +YL+DI+THAELL+YDWT
Sbjct: 242 VKKQIKARNVDYEVQSKVFSDAYLSDLEQLYKQQYLKDISTHAELLIYDWTAGGETEVVV 301
Query: 330 EDIERLNFDQY-TEREEPKMKDWRLPREVDWADQRALYTNQKHLLMNLLAIPKLDIPELI 154
EDIER++F+Q+ + KM DWR P E +W + R Y ++K LMN +P+ D+PEL+
Sbjct: 302 EDIERIDFNQFEADIHNKKMLDWRFPLEAEWCEARIKYCHEKPDLMNYFNVPRFDVPELV 361
Query: 153 TSAEDCYEREKVISAHPAFRYELGY 79
SA+D V P +Y GY
Sbjct: 362 RSADDGKVWRDVWFNAPGMKYRPGY 386
>AE014297-3086|AAN13899.1| 407|Drosophila melanogaster CG6343-PB,
isoform B protein.
Length = 407
Score = 129 bits (311), Expect = 4e-30
Identities = 61/145 (42%), Positives = 90/145 (62%), Gaps = 1/145 (0%)
Frame = -3
Query: 510 VQEAIKKRALSHEVTSKALTPAFLTEIEKQYKNKYLRDIATHAELLVYDWTXXXXXXXXX 331
V++ IK R + +EV SK + A+L+++E+ YK +YL+DI+THAELL+YDWT
Sbjct: 242 VKKQIKARNVDYEVQSKVFSDAYLSDLEQLYKQQYLKDISTHAELLIYDWTAGGETEVVV 301
Query: 330 EDIERLNFDQY-TEREEPKMKDWRLPREVDWADQRALYTNQKHLLMNLLAIPKLDIPELI 154
EDIER++F+Q+ + KM DWR P E +W + R Y ++K LMN +P+ D+PEL+
Sbjct: 302 EDIERIDFNQFEADIHNKKMLDWRFPLEAEWCEARIKYCHEKPDLMNYFNVPRFDVPELV 361
Query: 153 TSAEDCYEREKVISAHPAFRYELGY 79
SA+D V P +Y GY
Sbjct: 362 RSADDGKVWRDVWFNAPGMKYRPGY 386
>AE014297-3085|AAF55947.1| 407|Drosophila melanogaster CG6343-PA,
isoform A protein.
Length = 407
Score = 129 bits (311), Expect = 4e-30
Identities = 61/145 (42%), Positives = 90/145 (62%), Gaps = 1/145 (0%)
Frame = -3
Query: 510 VQEAIKKRALSHEVTSKALTPAFLTEIEKQYKNKYLRDIATHAELLVYDWTXXXXXXXXX 331
V++ IK R + +EV SK + A+L+++E+ YK +YL+DI+THAELL+YDWT
Sbjct: 242 VKKQIKARNVDYEVQSKVFSDAYLSDLEQLYKQQYLKDISTHAELLIYDWTAGGETEVVV 301
Query: 330 EDIERLNFDQY-TEREEPKMKDWRLPREVDWADQRALYTNQKHLLMNLLAIPKLDIPELI 154
EDIER++F+Q+ + KM DWR P E +W + R Y ++K LMN +P+ D+PEL+
Sbjct: 302 EDIERIDFNQFEADIHNKKMLDWRFPLEAEWCEARIKYCHEKPDLMNYFNVPRFDVPELV 361
Query: 153 TSAEDCYEREKVISAHPAFRYELGY 79
SA+D V P +Y GY
Sbjct: 362 RSADDGKVWRDVWFNAPGMKYRPGY 386
>AE014298-1726|AAX52488.1| 1849|Drosophila melanogaster CG1522-PG,
isoform G protein.
Length = 1849
Score = 31.9 bits (69), Expect = 0.84
Identities = 26/76 (34%), Positives = 40/76 (52%)
Frame = +1
Query: 79 VSQFVTEGWVSRNNLFSLVTVLGASYQLRYVQFGDGEQIHQQVLLVRVERALVGPVHFAR 258
V F + W N+F L+TVLG+ +++FGD I+ V +R+ RA AR
Sbjct: 1151 VKNFFKDPW----NIFDLITVLGSIVDALWMEFGDSNSIN--VGFLRLFRA-------AR 1197
Query: 259 QTPVLHLGLFTLRILV 306
+L G +T+RIL+
Sbjct: 1198 LIKLLRQG-YTIRILL 1212
>AE014298-1722|AAX52486.1| 1849|Drosophila melanogaster CG1522-PH,
isoform H protein.
Length = 1849
Score = 31.9 bits (69), Expect = 0.84
Identities = 26/76 (34%), Positives = 40/76 (52%)
Frame = +1
Query: 79 VSQFVTEGWVSRNNLFSLVTVLGASYQLRYVQFGDGEQIHQQVLLVRVERALVGPVHFAR 258
V F + W N+F L+TVLG+ +++FGD I+ V +R+ RA AR
Sbjct: 1151 VKNFFKDPW----NIFDLITVLGSIVDALWMEFGDSNSIN--VGFLRLFRA-------AR 1197
Query: 259 QTPVLHLGLFTLRILV 306
+L G +T+RIL+
Sbjct: 1198 LIKLLRQG-YTIRILL 1212
>U55776-1|AAC47406.1| 1851|Drosophila melanogaster calcium channel
alpha-1 subunit protein.
Length = 1851
Score = 30.3 bits (65), Expect = 2.6
Identities = 24/76 (31%), Positives = 38/76 (50%)
Frame = +1
Query: 79 VSQFVTEGWVSRNNLFSLVTVLGASYQLRYVQFGDGEQIHQQVLLVRVERALVGPVHFAR 258
V F + W N+F L+TVLG+ +++FG + V +R+ RA AR
Sbjct: 1151 VKNFFKDPW----NIFDLITVLGSIVDALWMEFGHDDSSSINVGFLRLFRA-------AR 1199
Query: 259 QTPVLHLGLFTLRILV 306
+L G +T+RIL+
Sbjct: 1200 LIKLLRQG-YTIRILL 1214
>AE014298-1728|AAS65325.1| 1851|Drosophila melanogaster CG1522-PF,
isoform F protein.
Length = 1851
Score = 29.9 bits (64), Expect = 3.4
Identities = 24/76 (31%), Positives = 38/76 (50%)
Frame = +1
Query: 79 VSQFVTEGWVSRNNLFSLVTVLGASYQLRYVQFGDGEQIHQQVLLVRVERALVGPVHFAR 258
V F + W N+F L+TVLG+ +++FG + V +R+ RA AR
Sbjct: 1151 VKNFFKDPW----NIFDLITVLGSIVDALWMEFGHDDSNSINVGFLRLFRA-------AR 1199
Query: 259 QTPVLHLGLFTLRILV 306
+L G +T+RIL+
Sbjct: 1200 LIKLLRQG-YTIRILL 1214
>AE014298-1724|AAS65323.1| 1851|Drosophila melanogaster CG1522-PE,
isoform E protein.
Length = 1851
Score = 29.9 bits (64), Expect = 3.4
Identities = 24/76 (31%), Positives = 38/76 (50%)
Frame = +1
Query: 79 VSQFVTEGWVSRNNLFSLVTVLGASYQLRYVQFGDGEQIHQQVLLVRVERALVGPVHFAR 258
V F + W N+F L+TVLG+ +++FG + V +R+ RA AR
Sbjct: 1151 VKNFFKDPW----NIFDLITVLGSIVDALWMEFGHDDSNSINVGFLRLFRA-------AR 1199
Query: 259 QTPVLHLGLFTLRILV 306
+L G +T+RIL+
Sbjct: 1200 LIKLLRQG-YTIRILL 1214
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,982,325
Number of Sequences: 53049
Number of extensions: 538387
Number of successful extensions: 1395
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1392
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2992560750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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