Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11m02
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21320-3|AAA62532.1|  436|Caenorhabditis elegans Hypothetical pr...    61   8e-10
Z73897-2|CAA98063.2|  140|Caenorhabditis elegans Hypothetical pr...    29   3.1  
L15322-1|AAA28146.1|  142|Caenorhabditis elegans spe-17 protein.       29   3.1  
U58760-2|AAK31460.1|  130|Caenorhabditis elegans Ribosomal prote...    28   7.1  
U23175-3|AAC46712.2|  959|Caenorhabditis elegans Anion/bicarbona...    28   7.1  
U23175-2|AAM98009.1|  797|Caenorhabditis elegans Anion/bicarbona...    28   7.1  
U23175-1|AAZ91355.1|  826|Caenorhabditis elegans Anion/bicarbona...    28   7.1  
AY887905-1|AAX34417.1|  959|Caenorhabditis elegans anion transpo...    28   7.1  

>U21320-3|AAA62532.1|  436|Caenorhabditis elegans Hypothetical
           protein K04G7.4a protein.
          Length = 436

 Score = 60.9 bits (141), Expect = 8e-10
 Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 2/124 (1%)
 Frame = -3

Query: 504 EAIKKRALSHEVTSKALTPAFLTEIEKQYKNKYLRDIATHAELLVYDWTXXXXXXXXXED 325
           E IK+R  + E+ +  +   +L  IE+ YK+  LR+   H+++L YDWT         ED
Sbjct: 235 ENIKRRGNTDEIAT--VDERYLKTIEESYKDS-LREYRNHSKILAYDWTKPGDTDAVVED 291

Query: 324 IERLNFDQYTEREEPKMKDWR-LPREVDWADQRALYTNQKHLLMNLL-AIPKLDIPELIT 151
           IERL+ D +       M++W  +   V W   R   TN+    M     IPK ++ EL T
Sbjct: 292 IERLDLDFFEWHSGDVMEEWNTIVDSVGWNGWRQYVTNKYDARMLAFDGIPKHEVGELYT 351

Query: 150 SAED 139
           +  D
Sbjct: 352 NPRD 355


>Z73897-2|CAA98063.2|  140|Caenorhabditis elegans Hypothetical
           protein ZK617.3 protein.
          Length = 140

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 306 DQYTEREEPKMKDWRLPREVDWADQRALYTNQKHLLMNLL 187
           +Q T R   K++ WR  R V W+  R LY  ++ +  +L+
Sbjct: 88  EQKTFRVARKLRTWRPRRSVTWSFLRRLYNGREDMKEDLI 127


>L15322-1|AAA28146.1|  142|Caenorhabditis elegans spe-17 protein.
          Length = 142

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 306 DQYTEREEPKMKDWRLPREVDWADQRALYTNQKHLLMNLL 187
           +Q T R   K++ WR  R V W+  R LY  ++ +  +L+
Sbjct: 90  EQKTFRVARKLRTWRPRRSVTWSFLRRLYNGREDMKEDLI 129


>U58760-2|AAK31460.1|  130|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 22, isoform a protein.
          Length = 130

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +1

Query: 67  FAWRVSQFVTEGWVSRNNL---FSLVTVLGASYQLRYVQFGDGE 189
           F+ R  +++T+ ++ RN+L     +V V   +Y++RY    DGE
Sbjct: 80  FSKRYLKYLTKKYLKRNSLRDWLRVVAVNKNTYEVRYFHINDGE 123


>U23175-3|AAC46712.2|  959|Caenorhabditis elegans Anion/bicarbonate
           transporter familyprotein 3, isoform a protein.
          Length = 959

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +1

Query: 184 GEQIHQQVLLVRVERALVGPVHFARQTPVLHLGLFTLRILVEV 312
           G ++ +++LL+  E+    P H+ R+ P   + LFT   L+++
Sbjct: 868 GNEMFERLLLLITEQQAYPPTHYIRKVPQRKVHLFTACQLLQL 910


>U23175-2|AAM98009.1|  797|Caenorhabditis elegans Anion/bicarbonate
           transporter familyprotein 3, isoform b protein.
          Length = 797

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +1

Query: 184 GEQIHQQVLLVRVERALVGPVHFARQTPVLHLGLFTLRILVEV 312
           G ++ +++LL+  E+    P H+ R+ P   + LFT   L+++
Sbjct: 706 GNEMFERLLLLITEQQAYPPTHYIRKVPQRKVHLFTACQLLQL 748


>U23175-1|AAZ91355.1|  826|Caenorhabditis elegans Anion/bicarbonate
           transporter familyprotein 3, isoform c protein.
          Length = 826

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +1

Query: 184 GEQIHQQVLLVRVERALVGPVHFARQTPVLHLGLFTLRILVEV 312
           G ++ +++LL+  E+    P H+ R+ P   + LFT   L+++
Sbjct: 735 GNEMFERLLLLITEQQAYPPTHYIRKVPQRKVHLFTACQLLQL 777


>AY887905-1|AAX34417.1|  959|Caenorhabditis elegans anion
           transporter ABTS-3 protein.
          Length = 959

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +1

Query: 184 GEQIHQQVLLVRVERALVGPVHFARQTPVLHLGLFTLRILVEV 312
           G ++ +++LL+  E+    P H+ R+ P   + LFT   L+++
Sbjct: 868 GNEMFERLLLLITEQQAYPPTHYIRKVPQRKVHLFTACQLLQL 910


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,548,512
Number of Sequences: 27780
Number of extensions: 281284
Number of successful extensions: 739
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)