Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11m01
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600...    29   2.2  
02_03_0199 + 16263549-16263644,16264941-16265899,16267140-162677...    27   8.9  

>10_08_0141 +
           15159160-15159306,15159708-15159815,15159958-15160006,
           15160067-15160182,15160358-15160399,15161026-15161442,
           15162356-15162509,15162911-15162975,15163793-15163870,
           15163951-15164061,15164227-15164271,15164677-15164850,
           15165383-15166335,15166471-15166681,15167037-15167196,
           15168786-15169174
          Length = 1072

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 533 FLYINQPINCKLLFKVFDGFSDIHANVF 616
           F Y++ P++   LFK++D F   H N+F
Sbjct: 510 FSYLDLPVDYMDLFKLYDPFGGDHLNIF 537


>02_03_0199 +
           16263549-16263644,16264941-16265899,16267140-16267791,
           16267895-16267981,16268253-16268381,16269990-16270036,
           16271337-16271438,16272720-16272843,16272981-16273028,
           16273934-16274026,16274325-16274408,16274536-16274619,
           16274751-16274819,16275531-16275590,16275946-16276017,
           16276957-16277064,16278162-16278238,16278391-16278474,
           16278617-16278728,16278778-16278810,16278811-16278900,
           16279012-16279077,16279163-16279258,16279446-16279497,
           16279723-16279775,16279998-16280018
          Length = 1165

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = -2

Query: 588 PSNTLNNNLQLIGWLIYKKYDQLLATSEELCTNTKFRIYNEVIDLL 451
           PSN LN   Q I  L  KK DQL   S+E   + + RIY+   +++
Sbjct: 488 PSNGLNLQAQ-IKHLNSKKLDQLSIWSQEEAQDIEKRIYSSQFEVI 532


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,765,290
Number of Sequences: 37544
Number of extensions: 174383
Number of successful extensions: 497
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)