Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11m01
(616 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY128445-1|AAM75038.1| 406|Drosophila melanogaster LD24471p pro... 45 7e-05
AE013599-3714|AAF47086.1| 406|Drosophila melanogaster CG4882-PA... 45 7e-05
AB010265-1|BAA32693.1| 406|Drosophila melanogaster protein ( Dr... 45 7e-05
AB010261-2|BAA32685.1| 406|Drosophila melanogaster protein ( Dr... 45 7e-05
AY089218-1|AAL89956.1| 305|Drosophila melanogaster AT01821p pro... 32 0.71
AF045470-1|AAF18568.1| 305|Drosophila melanogaster Gom protein. 32 0.71
AE013599-3345|AAF46808.2| 305|Drosophila melanogaster CG6727-PA... 32 0.71
X14394-1|CAA32567.1| 362|Drosophila melanogaster sodium channel... 29 5.0
AE013599-3978|AAM70798.1| 1618|Drosophila melanogaster CG9071-PA... 29 5.0
AE013599-3977|AAF47291.4| 2327|Drosophila melanogaster CG9071-PB... 29 5.0
AE014296-744|AAF47827.2| 505|Drosophila melanogaster CG11593-PA... 28 8.7
>AY128445-1|AAM75038.1| 406|Drosophila melanogaster LD24471p
protein.
Length = 406
Score = 45.2 bits (102), Expect = 7e-05
Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 1/126 (0%)
Frame = -2
Query: 393 SLLAKIEIIPTKPSLQASLTDNIENAINKTQEKDVAAQKELFILWEKTRQLKLEEQSHRL 214
SL +E ++Q+ L ++++ + K + K +A E + W K + ++ Q
Sbjct: 277 SLQEAVEKSSKSNAIQSLLENSVKANVQKFEPKLLADYGESYQEWAKKFEAAVQRQLDSQ 336
Query: 213 DRVKRVXXXXXXXXXXXXXXXXLWFFENEEKIDLQIEDKEKLVDKTQ-TKKKVLTAIDEN 37
+R LWFFEN + ID+QI K+ K KKK A D
Sbjct: 337 SVEERKATIQKTLSELEAKRQNLWFFENRDDIDIQIYKKKVYYPKRWFGKKKKPKAADTF 396
Query: 36 YIPPEI 19
Y+PP I
Sbjct: 397 YVPPTI 402
>AE013599-3714|AAF47086.1| 406|Drosophila melanogaster CG4882-PA
protein.
Length = 406
Score = 45.2 bits (102), Expect = 7e-05
Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 1/126 (0%)
Frame = -2
Query: 393 SLLAKIEIIPTKPSLQASLTDNIENAINKTQEKDVAAQKELFILWEKTRQLKLEEQSHRL 214
SL +E ++Q+ L ++++ + K + K +A E + W K + ++ Q
Sbjct: 277 SLQEAVEKSSKSNAIQSLLENSVKANVQKFEPKLLADYGESYQEWAKKFEAAVQRQLDSQ 336
Query: 213 DRVKRVXXXXXXXXXXXXXXXXLWFFENEEKIDLQIEDKEKLVDKTQ-TKKKVLTAIDEN 37
+R LWFFEN + ID+QI K+ K KKK A D
Sbjct: 337 SVEERKATIQKTLSELEAKRQNLWFFENRDDIDIQIYKKKVYYPKRWFGKKKKPKAADTF 396
Query: 36 YIPPEI 19
Y+PP I
Sbjct: 397 YVPPTI 402
>AB010265-1|BAA32693.1| 406|Drosophila melanogaster protein (
Drosophila melanogastermRNA at 60A locus in chromosome
2R, complete cds. ).
Length = 406
Score = 45.2 bits (102), Expect = 7e-05
Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 1/126 (0%)
Frame = -2
Query: 393 SLLAKIEIIPTKPSLQASLTDNIENAINKTQEKDVAAQKELFILWEKTRQLKLEEQSHRL 214
SL +E ++Q+ L ++++ + K + K +A E + W K + ++ Q
Sbjct: 277 SLQEAVEKSSKSNAIQSLLENSVKANVQKFEPKLLADYGESYQEWAKKFEAAVQRQLDSQ 336
Query: 213 DRVKRVXXXXXXXXXXXXXXXXLWFFENEEKIDLQIEDKEKLVDKTQ-TKKKVLTAIDEN 37
+R LWFFEN + ID+QI K+ K KKK A D
Sbjct: 337 SVEERKATIQKTLSELEAKRQNLWFFENRDDIDIQIYKKKVYYPKRWFGKKKKPKAADTF 396
Query: 36 YIPPEI 19
Y+PP I
Sbjct: 397 YVPPTI 402
>AB010261-2|BAA32685.1| 406|Drosophila melanogaster protein (
Drosophila melanogastergenes at 60A locus in chromosome
2R. ).
Length = 406
Score = 45.2 bits (102), Expect = 7e-05
Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 1/126 (0%)
Frame = -2
Query: 393 SLLAKIEIIPTKPSLQASLTDNIENAINKTQEKDVAAQKELFILWEKTRQLKLEEQSHRL 214
SL +E ++Q+ L ++++ + K + K +A E + W K + ++ Q
Sbjct: 277 SLQEAVEKSSKSNAIQSLLENSVKANVQKFEPKLLADYGESYQEWAKKFEAAVQRQLDSQ 336
Query: 213 DRVKRVXXXXXXXXXXXXXXXXLWFFENEEKIDLQIEDKEKLVDKTQ-TKKKVLTAIDEN 37
+R LWFFEN + ID+QI K+ K KKK A D
Sbjct: 337 SVEERKATIQKTLSELEAKRQNLWFFENRDDIDIQIYKKKVYYPKRWFGKKKKPKAADTF 396
Query: 36 YIPPEI 19
Y+PP I
Sbjct: 397 YVPPTI 402
>AY089218-1|AAL89956.1| 305|Drosophila melanogaster AT01821p
protein.
Length = 305
Score = 31.9 bits (69), Expect = 0.71
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = -2
Query: 291 VAAQKELFILWEKTRQLKLEEQSHRLDRVKR 199
+AA++E F LWEK +LEEQ +++++
Sbjct: 211 LAAEREAFELWEKDELKRLEEQEKEREKIRK 241
>AF045470-1|AAF18568.1| 305|Drosophila melanogaster Gom protein.
Length = 305
Score = 31.9 bits (69), Expect = 0.71
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = -2
Query: 291 VAAQKELFILWEKTRQLKLEEQSHRLDRVKR 199
+AA++E F LWEK +LEEQ +++++
Sbjct: 211 LAAEREAFELWEKDELKRLEEQEKEREKIRK 241
>AE013599-3345|AAF46808.2| 305|Drosophila melanogaster CG6727-PA
protein.
Length = 305
Score = 31.9 bits (69), Expect = 0.71
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = -2
Query: 291 VAAQKELFILWEKTRQLKLEEQSHRLDRVKR 199
+AA++E F LWEK +LEEQ +++++
Sbjct: 211 LAAEREAFELWEKDELKRLEEQEKEREKIRK 241
>X14394-1|CAA32567.1| 362|Drosophila melanogaster sodium channel
protein protein.
Length = 362
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/81 (19%), Positives = 35/81 (43%)
Frame = +2
Query: 188 IICTRFTLSRRCDCSSSFNCLVFSQRINNSFCAATSFSWVLLIAFSILSVKDACKEGFVG 367
++C T +R C + CL + N+ + +F W +L F ++++ D + +
Sbjct: 254 VLCGNLTGARHCPFE--YVCLCVGENPNHGYTNFDNFMWSMLTTFQLITL-DYWENVYNM 310
Query: 368 IISIFASKDIHFSNTSFFSGS 430
+++ + F F GS
Sbjct: 311 VLATCGPMSVSFFTVVVFFGS 331
>AE013599-3978|AAM70798.1| 1618|Drosophila melanogaster CG9071-PA,
isoform A protein.
Length = 1618
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/81 (19%), Positives = 35/81 (43%)
Frame = +2
Query: 188 IICTRFTLSRRCDCSSSFNCLVFSQRINNSFCAATSFSWVLLIAFSILSVKDACKEGFVG 367
++C T +R C + CL + N+ + +F W +L F ++++ D + +
Sbjct: 307 VLCGNLTGARHCPFE--YVCLCVGENPNHGYTNFDNFMWSMLTTFQLITL-DYWENVYNM 363
Query: 368 IISIFASKDIHFSNTSFFSGS 430
+++ + F F GS
Sbjct: 364 VLATCGPMSVSFFTVVVFFGS 384
>AE013599-3977|AAF47291.4| 2327|Drosophila melanogaster CG9071-PB,
isoform B protein.
Length = 2327
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/81 (19%), Positives = 35/81 (43%)
Frame = +2
Query: 188 IICTRFTLSRRCDCSSSFNCLVFSQRINNSFCAATSFSWVLLIAFSILSVKDACKEGFVG 367
++C T +R C + CL + N+ + +F W +L F ++++ D + +
Sbjct: 307 VLCGNLTGARHCPFE--YVCLCVGENPNHGYTNFDNFMWSMLTTFQLITL-DYWENVYNM 363
Query: 368 IISIFASKDIHFSNTSFFSGS 430
+++ + F F GS
Sbjct: 364 VLATCGPMSVSFFTVVVFFGS 384
>AE014296-744|AAF47827.2| 505|Drosophila melanogaster CG11593-PA
protein.
Length = 505
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -2
Query: 126 EKIDLQIEDKEKLVDKTQTKKKVLTAIDENYIPPEILP 13
EK L++E ++ DK + + K +A+D + PE+LP
Sbjct: 63 EKNILKLEQAKQDHDKEELEFKTTSALDNRILRPELLP 100
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,509,649
Number of Sequences: 53049
Number of extensions: 319646
Number of successful extensions: 1273
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1269
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2517878700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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