Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11m01
(616 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical p... 29 3.5
Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr... 29 3.5
AL132943-6|CAC14393.1| 511|Caenorhabditis elegans Hypothetical ... 28 6.1
AF022972-3|AAC48235.2| 526|Caenorhabditis elegans Udp-glucurono... 28 6.1
AJ505020-1|CAD43602.1| 382|Caenorhabditis elegans alpha-1->3-fu... 27 8.1
AC006674-5|AAF39933.2| 382|Caenorhabditis elegans Fucosyl trans... 27 8.1
>Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical
protein C34E11.3 protein.
Length = 1577
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/53 (22%), Positives = 30/53 (56%)
Frame = -2
Query: 384 AKIEIIPTKPSLQASLTDNIENAINKTQEKDVAAQKELFILWEKTRQLKLEEQ 226
AK++ + + + ++ + N + +T+EK + E+F L EK R+++ + +
Sbjct: 219 AKVKELEYEIRVAKEVSVRLHNELEQTEEKRCKLEDEVFYLKEKVREIQTQNK 271
>Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical
protein C34E11.3 protein.
Length = 1577
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/53 (22%), Positives = 30/53 (56%)
Frame = -2
Query: 384 AKIEIIPTKPSLQASLTDNIENAINKTQEKDVAAQKELFILWEKTRQLKLEEQ 226
AK++ + + + ++ + N + +T+EK + E+F L EK R+++ + +
Sbjct: 219 AKVKELEYEIRVAKEVSVRLHNELEQTEEKRCKLEDEVFYLKEKVREIQTQNK 271
>Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical
protein C34E11.3 protein.
Length = 1577
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/53 (22%), Positives = 30/53 (56%)
Frame = -2
Query: 384 AKIEIIPTKPSLQASLTDNIENAINKTQEKDVAAQKELFILWEKTRQLKLEEQ 226
AK++ + + + ++ + N + +T+EK + E+F L EK R+++ + +
Sbjct: 219 AKVKELEYEIRVAKEVSVRLHNELEQTEEKRCKLEDEVFYLKEKVREIQTQNK 271
>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical
protein F54B3.1b protein.
Length = 3394
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +2
Query: 203 FTLSR--RCDCSSSFNCLVFSQRINNSFCAATSFSWVLLIAFSILSVKDACKEGFVGIIS 376
FT R + DC N +++S ++ +FC + ++V L + + +++ K + I
Sbjct: 608 FTTERILKFDCRYPLNAVLYSIKVRATFCLVENQTYVTL----VYATQNSKKPSYFFIRK 663
Query: 377 IFASKDIHFSNTSFFSGST 433
+ + + T+F G T
Sbjct: 664 VICNGPVAIIKTAFLGGVT 682
>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical
protein F54B3.1a protein.
Length = 3396
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +2
Query: 203 FTLSR--RCDCSSSFNCLVFSQRINNSFCAATSFSWVLLIAFSILSVKDACKEGFVGIIS 376
FT R + DC N +++S ++ +FC + ++V L + + +++ K + I
Sbjct: 608 FTTERILKFDCRYPLNAVLYSIKVRATFCLVENQTYVTL----VYATQNSKKPSYFFIRK 663
Query: 377 IFASKDIHFSNTSFFSGST 433
+ + + T+F G T
Sbjct: 664 VICNGPVAIIKTAFLGGVT 682
>AL132943-6|CAC14393.1| 511|Caenorhabditis elegans Hypothetical
protein Y116F11B.11 protein.
Length = 511
Score = 27.9 bits (59), Expect = 6.1
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = -2
Query: 381 KIEIIPTKPSLQASLTDNIENAINKTQEKDVAAQKEL--FILWEKTRQLKLEEQSHRLDR 208
K +P KP LQ +++ IEN +N Q+ KE+ FI ++ KLE+ S + +
Sbjct: 241 KCNSLPVKPILQTEISNLIEN-VNSVQKLHQMPTKEMAVFICFQ-----KLEKDSEKFLK 294
Query: 207 VKRV 196
V +V
Sbjct: 295 VIQV 298
>AF022972-3|AAC48235.2| 526|Caenorhabditis elegans
Udp-glucuronosyltransferase protein40 protein.
Length = 526
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 600 ISEKPSNTLNNNLQLIGWLIYKKYDQLLATSEELC 496
I+ + +N L NNL L+ L KK+D +L S C
Sbjct: 116 ITREQNNVLANNLALLDGLKQKKFDLILFESVFTC 150
>AJ505020-1|CAD43602.1| 382|Caenorhabditis elegans
alpha-1->3-fucosyltransferase homologueprotein.
Length = 382
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 615 KTLAWISEKPSNTLNNNLQLIGWLIYK 535
KT W+ NT NN +QLIG +I K
Sbjct: 184 KTATWLGSN-CNTPNNRIQLIGKMIQK 209
>AC006674-5|AAF39933.2| 382|Caenorhabditis elegans Fucosyl
transferase protein 4 protein.
Length = 382
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 615 KTLAWISEKPSNTLNNNLQLIGWLIYK 535
KT W+ NT NN +QLIG +I K
Sbjct: 184 KTATWLGSN-CNTPNNRIQLIGKMIQK 209
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,233,487
Number of Sequences: 27780
Number of extensions: 188287
Number of successful extensions: 767
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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