Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11m01
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   3.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.2  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   9.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   9.6  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   9.6  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   9.6  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 3   IVVWVRFLVVYSFHLLLLKPFSLFAFYLQVFLYLQF 110
           IV W+ F V+      L  P ++ AF   +FL+L +
Sbjct: 382 IVCWLPFFVLALVRPFLKNPDAIPAFLSSLFLWLGY 417



 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 277 FLCCYILFLGFVNSIFN 327
           FL    L+LG+ NS+ N
Sbjct: 407 FLSSLFLWLGYCNSLLN 423


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 516 PITDHISYISTNQLIVSYCLKYSMVF 593
           P T+H+ Y+  +  I  Y   + MVF
Sbjct: 199 PFTEHLGYLIFSSTISFYLPLFVMVF 224


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 600 ISEKPSNTLNNNLQLI 553
           +S KP N+ +NN+ L+
Sbjct: 515 LSAKPKNSQDNNISLL 530


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = -3

Query: 542 YIRNMISYWQQVKNY 498
           Y+R M+ YW     Y
Sbjct: 236 YMREMLPYWMSSSQY 250


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = -3

Query: 542 YIRNMISYWQQVKNY 498
           Y+R M+ YW     Y
Sbjct: 236 YMREMLPYWMSSSQY 250


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 540 YKKYDQLLATSEELCTNT 487
           YKK  Q+L    +LC  T
Sbjct: 259 YKKIQQILIRMNKLCIQT 276


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 454 SK*RAA*GRTREKRSIREMYILTGKNRNYSY 362
           S+ RA   R+RE + I  +   T  N NY Y
Sbjct: 66  SRDRAERERSREPKIISSLSNNTIHNNNYKY 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,193
Number of Sequences: 438
Number of extensions: 2488
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)