Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11l24
(619 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 27 0.19
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 26 0.34
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 25 0.45
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 25 0.45
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 25 0.45
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 24 1.0
DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex det... 23 2.4
DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex det... 22 4.2
U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive o... 22 5.5
AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin ... 22 5.5
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 21 7.3
AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength rhodo... 21 7.3
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 26.6 bits (56), Expect = 0.19
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 355 RTIHNLYNQRYKYIKNNVAQYLITTYGDLTY 447
RTIHN N +Y Y NN Y ++ Y
Sbjct: 88 RTIHNNNNYKYNYNNNNYNNNCKKLYYNINY 118
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 25.8 bits (54), Expect = 0.34
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 2 SDDES*-SDTDGVMVDSPIVGTTSLDVFPLQDI 97
SDD+ S G +SP G+T D+ LQD+
Sbjct: 343 SDDKKVISSKSGSKANSPFPGSTEADIIELQDL 375
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 25.4 bits (53), Expect = 0.45
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 355 RTIHNLYNQRYKYIKNNVAQYLITTYGDLTY 447
+TIHN N +Y Y NN Y ++ Y
Sbjct: 88 KTIHNNNNYKYNYNNNNYNNNCKKLYYNINY 118
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 25.4 bits (53), Expect = 0.45
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 355 RTIHNLYNQRYKYIKNNVAQYLITTYGDLTY 447
+TIHN N +Y Y NN Y ++ Y
Sbjct: 88 KTIHNNNNYKYNYNNNNYNNNCKKLYYNINY 118
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 25.4 bits (53), Expect = 0.45
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 355 RTIHNLYNQRYKYIKNNVAQYLITTYGDLTY 447
+TIHN N +Y Y NN Y ++ Y
Sbjct: 88 KTIHNNNNYKYNYNNNNYNNNCKKLYYNINY 118
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 24.2 bits (50), Expect = 1.0
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 355 RTIHNLYNQRYKYIKNN 405
+TIHN N +Y Y NN
Sbjct: 321 KTIHNNNNYKYNYNNNN 337
>DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 23.0 bits (47), Expect = 2.4
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +1
Query: 355 RTIHNLYNQRYKYIKNNVAQYLITTYGDLTY 447
+TIHN N +Y Y NN Y Y Y
Sbjct: 88 KTIHNNNNYKYNY--NNKYNYNNNNYNKKLY 116
>DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.2 bits (45), Expect = 4.2
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +1
Query: 355 RTIHNLYNQRYKYIKNNVAQYLITTY 432
+TIHN N +Y Y N Y Y
Sbjct: 88 KTIHNNNNYKYNYNNNCKKLYYNINY 113
>U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive
opsin protein.
Length = 377
Score = 21.8 bits (44), Expect = 5.5
Identities = 10/49 (20%), Positives = 22/49 (44%)
Frame = +3
Query: 81 FHFRTFLIVKKICITSFLFYCFLLWIHLVAANQETIDILHEMLIVDYDL 227
FH +I + I S + C ++WI + + T + + + +D+
Sbjct: 56 FHIGLAIIYSMLLIMSLVGNCCVIWIFSTSKSLRTPSNMFIVSLAIFDI 104
>AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin
protein.
Length = 377
Score = 21.8 bits (44), Expect = 5.5
Identities = 10/49 (20%), Positives = 22/49 (44%)
Frame = +3
Query: 81 FHFRTFLIVKKICITSFLFYCFLLWIHLVAANQETIDILHEMLIVDYDL 227
FH +I + I S + C ++WI + + T + + + +D+
Sbjct: 56 FHIGLAIIYSMLLIMSLVGNCCVIWIFSTSKSLRTPSNMFIVSLAIFDI 104
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 21.4 bits (43), Expect = 7.3
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -2
Query: 432 ISCN*ILCYVIFNIFVPLII 373
+S + ++CY I+ FVPL +
Sbjct: 212 LSASYLVCYGIWVYFVPLFL 231
>AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength
rhodopsin protein.
Length = 154
Score = 21.4 bits (43), Expect = 7.3
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -2
Query: 432 ISCN*ILCYVIFNIFVPLII 373
+S + ++CY I+ FVPL +
Sbjct: 88 LSASYLVCYGIWVYFVPLFL 107
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,100
Number of Sequences: 438
Number of extensions: 3280
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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