Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11l20
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   6.3  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   6.3  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   6.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.3  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 308 QPVLEDEYVDLQLQRSG 258
           +PV+ +E VD  L++SG
Sbjct: 168 KPVVAEETVDYMLEKSG 184


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +1

Query: 31  ERCNEPRDRFQEDRRLHRRVQR 96
           E+ +  +++F E+R  H+R  R
Sbjct: 253 EKLHNEKEKFLEERTSHKRYSR 274


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -3

Query: 190 YENDVLFFIYNREFNDALELDTIVNASGDRKAVGHDGEV 74
           Y+N +++ IY R F D+ + D I + +G    + H  ++
Sbjct: 27  YKNALVYQIYPRSFQDS-DGDGIGDLNGITARMDHIADI 64


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 85  DGEVSGLPEIYLVVHYTFLNDQRHYY 8
           DG+   LP   L+VH    +DQ H Y
Sbjct: 182 DGKFHLLPTGELLVHSLEFSDQIHGY 207


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 85  DGEVSGLPEIYLVVHYTFLNDQRHYY 8
           DG+   LP   L+VH    +DQ H Y
Sbjct: 182 DGKFHLLPTGELLVHSLEFSDQIHGY 207


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,268
Number of Sequences: 438
Number of extensions: 3944
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)