Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11l14
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    60   2e-11
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    24   1.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.0  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   9.0  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 60.1 bits (139), Expect = 2e-11
 Identities = 45/141 (31%), Positives = 76/141 (53%), Gaps = 8/141 (5%)
 Frame = -2

Query: 677 VVXELNLADIDNMYLFVEKVYGICGHVDILVNNGGVTHRGSILNTKTDVDQKIMFINYFG 498
           V  + +L++ +++   +E V    G +DIL+NN  +    ++ N +    +KI  IN  G
Sbjct: 59  VPLQCDLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINLLG 118

Query: 497 SVALTKAVLPKMIERK---SGHVVFNSSVQGLISIP---NRSAYAASKHALQAFGDCLRA 336
              + + VL K++++K   +G +V  +   GL  +P   NR AY ASK AL    DCLR+
Sbjct: 119 LTCMIQEVL-KLMKKKGINNGIIVNINDASGLNLLPMNRNRPAYLASKCALTTLTDCLRS 177

Query: 335 EMDQYGINVTV--VSPGYIKT 279
           E+ Q   N+ V  +SP  ++T
Sbjct: 178 ELAQCESNIKVISISPDLVET 198


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +3

Query: 213 RCGGIHNTMSVTRSGESVH*YSCFYIPWANNSNINTVLIHLSTKTVT 353
           R  G     +++R+G  +     F  P+ N SN++ ++    TK  T
Sbjct: 246 RINGFTVAQTISRNGVRLSSARAFITPFENRSNLHVIVNATVTKVRT 292


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +1

Query: 421 TELLNTTCPDFLSIIFGSTAFVNATDPK*LIN-IIF*STSVLVFKIDPL*VTPPLLTKMS 597
           TEL   + PD + ++F +  ++N   P    + +      +    I+ + +T  LLTK++
Sbjct: 608 TELSPLSVPDSVELLFINNNYINLVRPNTFTDKVNLTRVDMYANMIETMELTSLLLTKVA 667


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -3

Query: 241  LMVLWMPPQRKVSHRNIQ 188
            +++ W PP  ++ H +IQ
Sbjct: 1023 ILITWSPPLPELRHGDIQ 1040


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -3

Query: 241  LMVLWMPPQRKVSHRNIQ 188
            +++ W PP  ++ H +IQ
Sbjct: 1019 ILITWSPPLPELRHGDIQ 1036


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 442 CPDFLSIIFGSTAFVNATD 498
           CP+  SI+F S+ F+N  +
Sbjct: 383 CPESDSILFVSSPFLNGLE 401


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,132
Number of Sequences: 438
Number of extensions: 4440
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)