Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11l09
(673 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 98 9e-22
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S... 91 1e-19
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p... 89 7e-19
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 66 3e-12
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S... 64 1e-11
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch... 47 3e-06
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 31 0.11
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran... 28 1.1
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|... 28 1.1
SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase Ups1|Schizos... 27 1.9
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 2.5
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 26 5.7
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom... 26 5.7
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 26 5.7
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 5.7
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom... 25 9.9
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha... 25 9.9
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 25 9.9
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 98.3 bits (234), Expect = 9e-22
Identities = 56/167 (33%), Positives = 88/167 (52%), Gaps = 2/167 (1%)
Frame = -2
Query: 663 VVPDIVTMGKPMGNGHPVAAVITTPEIAKSFSDTGVEYFNTYGGNPVSCAIANAVLDVIE 484
+VPDI+T+ K +G G +AAVIT+ EI K D G ++ T+ +P+ AI + VL V++
Sbjct: 271 IVPDILTLSKSLGAGTALAAVITSEEIEKVCYDNGFVFYTTHASDPLPAAIGSTVLKVVK 330
Query: 483 EENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVGVELVTDRETRTPATAEAKHV 304
+NL+E+A G L S LK KH L+ DVRG GL G+E+ + + P+ +
Sbjct: 331 RDNLVEKAKISGELLRSDLLRLKDKHPLIVDVRGLGLLQGIEIASCTDPSKPSDFLGTVI 390
Query: 303 VNRMRE--ENILISRDGPDSNVLKFKPPMVFTTQDADRLVETLDRVL 169
++ E N I V + PP+ T ++ + +E D L
Sbjct: 391 GDKCLELGMNCNIVHLRGIGGVFRIAPPLTVTDEEIHKAIEIFDSAL 437
>SPBC1773.03c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 91.1 bits (216), Expect = 1e-19
Identities = 52/178 (29%), Positives = 94/178 (52%), Gaps = 11/178 (6%)
Frame = -2
Query: 669 QDVVPDIVTMGKPMGNGH-PVAAVITTPEIAKSFS--DTGVEYFNTYGGNPVSCAIANAV 499
+ V PDI ++ K +G G+ P++ + I F D + F TY +P++C+ A AV
Sbjct: 274 EGVTPDIQSIAKCLGGGYQPISGALVGHRIMNVFEQKDAAMAGFFTYQAHPIACSAALAV 333
Query: 498 LDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVGVELVTDRETRT--PA 325
++ ++L+ERA+ +G +L + + H VG++RGRGLF G+E+V D+ T+ P
Sbjct: 334 QTILRRDHLVERAAEMGKYLSEKLHETFDSHPNVGNIRGRGLFWGLEIVKDKATKECFPP 393
Query: 324 TAEAKHVVNRMR-EENILI-----SRDGPDSNVLKFKPPMVFTTQDADRLVETLDRVL 169
+ + N++ E + + + DG + + PP + T + D LVE L + +
Sbjct: 394 EYKVGSLANKIGCEHGVFVYPGMGTIDGTRGDHVLLAPPYIITREQIDELVEALSKTI 451
>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 438
Score = 88.6 bits (210), Expect = 7e-19
Identities = 59/170 (34%), Positives = 96/170 (56%), Gaps = 1/170 (0%)
Frame = -2
Query: 666 DVVPDIVTMGKPMGNG-HPVAAVITTPEIAKSFSDTGVEYFNTYGGNPVSCAIANAVLDV 490
+V PD+V +GK + G +PV+AV+++ EI +F + G + +TYGGNP+ A++ A L+V
Sbjct: 265 NVKPDVVILGKAISGGVYPVSAVLSSREIMLNF-EPGT-HGSTYGGNPLGAAVSIAALEV 322
Query: 489 IEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVGVELVTDRETRTPATAEAK 310
++EE L ERA+ +G R ++ K +V VRGRGL V V D TA
Sbjct: 323 VKEEKLTERAAVLGEKF--RTALIECKSPIVQKVRGRGLLNAV--VIDESKTNGRTAWDL 378
Query: 309 HVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDADRLVETLDRVLGEL 160
++ MR +L N+++F PP+V T +D + +E + + L +L
Sbjct: 379 CLI--MRSRGVLAK--PTHGNIIRFSPPLVITEEDLMKGIEVIKKSLNDL 424
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 66.5 bits (155), Expect = 3e-12
Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Frame = -2
Query: 657 PDIVTMGKPMGNGHPVAAVITTPEIAKSFSDTGVEYFNTYGGNPVSCAIANAVLDVIEEE 478
PDI+T+ KP+ NG P+ A I + +IA E+ +T+GGNPV+C + ++ +
Sbjct: 287 PDIITVAKPLANGLPIGATIVSSKIAAEIHPG--EHGSTFGGNPVACRVGTFCVNELGSS 344
Query: 477 NLLERASRVGNHLLSRCEDLKHKH-RLVGDVRGRGLFVGVE 358
+L+ + L SR +D K+ L+ GRGL +G++
Sbjct: 345 KILQNVRKQHKALTSRFDDFVAKYPNLIRGYAGRGLLLGLQ 385
>SPAC27F1.05c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 1|||Manual
Length = 484
Score = 64.5 bits (150), Expect = 1e-11
Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 8/179 (4%)
Frame = -2
Query: 669 QDVVPDIVTMGKPMGNGH-PVAAVITTPEI---AKSFSDTGVEYFNTYGGNPVSCAIANA 502
++++PD + K G P A I T E+ A + +T + TY N + A A
Sbjct: 294 ENIIPDCIAFAKGFSGGLIPFAGYIATEELWNAAYNSLETAFLHTATYQENTLGLAAGVA 353
Query: 501 VLDVIEEENLLERASRVGNHLLSRCEDLKHKH-RLVGDVRGRGLFVGVELVTDRETRTPA 325
+D I + +LL R ++G + R L+ K ++ DVRGRG+ VG+E E+
Sbjct: 354 TIDYIVQNDLLSRCRKLGGIMFDRLNKLQTKFPHVMKDVRGRGMIVGIEFYPIPESVQEE 413
Query: 324 TAE--AKHVVNRMREE-NILISRDGPDSNVLKFKPPMVFTTQDADRLVETLDRVLGELD 157
E A +VN + + ++ + + +V +F PP+ D D + ++ + + D
Sbjct: 414 FGEYYATPIVNDLADTYHVQVYCSLNNPSVFRFLPPLTIPEADLDEGLSAVESAVAKFD 472
>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 474
Score = 46.8 bits (106), Expect = 3e-06
Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 1/130 (0%)
Frame = -2
Query: 555 EYFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNHLLSRCEDLKHKH-RLVGDVRGR 379
++FNT+ G+P + +L I++++LL VG+ L + E+L KH + ++RG+
Sbjct: 353 QHFNTWMGDPFRAVQSRYILQEIQDKDLLNNVKSVGDFLYAGLEELARKHPGKINNLRGK 412
Query: 378 GLFVGVELVTDRETRTPATAEAKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDAD 199
G G + D E +PA + R+ NI G ++ +P +VF A
Sbjct: 413 G--KGTFIAWDCE--SPAARDKFCADMRINGVNI----GGCGVAAIRLRPMLVFQKHHAQ 464
Query: 198 RLVETLDRVL 169
L++ +D ++
Sbjct: 465 ILLKKIDELI 474
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 31.5 bits (68), Expect = 0.11
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -3
Query: 446 TIYSVGVKI*SINIDSSAMSAVGVCL*ASNLSPTGKPEL 330
+IY + I S NIDSS V + AS +SP+ P+L
Sbjct: 166 SIYEFNIGIPSSNIDSSQFLPVSRAIAASEISPSSSPQL 204
>SPCC417.11c |||glutamate-1-semialdehyde
2,1-aminomutaseaminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 435
Score = 28.3 bits (60), Expect = 1.1
Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 3/102 (2%)
Frame = -2
Query: 657 PDIVTMGKPMGNGHPVAAVITTPEIAKSFSDT---GVEYFNTYGGNPVSCAIANAVLDVI 487
PD+ T+GK +G G P A +I F + + T+ + ++ L +
Sbjct: 263 PDLTTLGKYLGGGLPFGAFGGRADIMSCFDPRLPGSLSHSGTFNNDTLTLTAGYVGLTEL 322
Query: 486 EEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVGV 361
++R + +G+ L E H ++ + G G + +
Sbjct: 323 YTPEAVKRLNALGDGLRKDIESYCHNTKM--SITGLGSIMNI 362
>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 570
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = -2
Query: 585 IAKSFSDTGVEYFNTYGGNPVSCAIANAVLDVIEEENL 472
I K++ DT E+ GNPV I N++LD+ + ENL
Sbjct: 532 IEKTYVDTVDEF-----GNPVKVLIDNSMLDLTDMENL 564
>SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase
Ups1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 251
Score = 27.5 bits (58), Expect = 1.9
Identities = 21/59 (35%), Positives = 31/59 (52%)
Frame = -2
Query: 249 NVLKFKPPMVFTTQDADRLVETLDRVLGELDDTRISNIKLEVLVTPINTEVPKKENVIK 73
NV K ++ T+Q R+ ETLD L + D+T I +E TPI T P ++ I+
Sbjct: 50 NVRKTYCGLIVTSQ---RVSETLDEALKQEDETERQKILME---TPIFTVGPATDDSIR 102
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.1 bits (57), Expect = 2.5
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = -2
Query: 495 DVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVGVELVTDRETRTPATAE 316
+++ +ENL+E ++ HL S E +K K + + R + +E + + T+ A
Sbjct: 1325 ELVSKENLIEELNQEIGHLKSELETVKSKSEDLENERAQNQ-SKIEQLELKNTKLAAAWR 1383
Query: 315 AKH--VVNRMREEN 280
K+ VVN+ E++
Sbjct: 1384 TKYEQVVNKSLEKH 1397
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 25.8 bits (54), Expect = 5.7
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = -2
Query: 216 TTQDADR--LVETLDRVLGELDD-TRISNIKLEVLVTPI 109
T +D +R LV+ +DR+L +LDD R K+ V++ P+
Sbjct: 427 TLEDQERHLLVKVIDRILYKLDDLVRPFTHKILVVIEPL 465
>SPAC1296.04 |mug65||spore wall assembly protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 25.8 bits (54), Expect = 5.7
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = -2
Query: 192 VETLDRVLGELDDTRISNIKLEVLVTPINTEVPKKENVIKSSVQKAIKT**MFYYCNSIN 13
V T+ +L L D+RI KLE L T + + ++ +K+ + +K + C N
Sbjct: 162 VTTIPALLRALQDSRIDREKLEALATFLASASIDEKVYVKNCKKDLLKNFVFEHSCRKAN 221
Query: 12 K 10
+
Sbjct: 222 E 222
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 25.8 bits (54), Expect = 5.7
Identities = 19/75 (25%), Positives = 32/75 (42%)
Frame = -2
Query: 621 GHPVAAVITTPEIAKSFSDTGVEYFNTYGGNPVSCAIANAVLDVIEEENLLERASRVGNH 442
GH AV++ PEI +DT F +Y + + + V +L RV
Sbjct: 810 GHYDDAVLSVPEIFIQITDTSTS-FGSYSTGKLKTRVIVGLCIVARNPSLHPGDVRVCKA 868
Query: 441 LLSRCEDLKHKHRLV 397
+ RC++L H ++
Sbjct: 869 V--RCDELMHLKNVI 881
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.8 bits (54), Expect = 5.7
Identities = 19/69 (27%), Positives = 36/69 (52%)
Frame = +2
Query: 119 TSTSNLIFDILVSSNSPKTLSRVSTSLSASCVVNTMGGLNFNTLLSGPSRLINIFSSLIL 298
+ST++L + V+SNS +L+ STS S + T + T L+ ++ SS +
Sbjct: 828 SSTTSLAANKGVNSNSITSLNLESTS-SVTSTAYTTDSVTSTTALTSQGPSSSVVSSSLS 886
Query: 299 LTTCFASAV 325
TT ++++
Sbjct: 887 STTSLSTSI 895
>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -2
Query: 468 ERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVGVELVTDR 343
E+A R+ +C D HR+ RGLF G + + R
Sbjct: 38 EQAFRLNVSNSKKCFDTISGHRITLPTNARGLFTGYDYESKR 79
>SPBC428.18 |cdt1||replication licensing factor
Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 444
Score = 25.0 bits (52), Expect = 9.9
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +2
Query: 116 VTSTSNLIFDILVSSNSPKTLSRVSTSLSASCVVNTMGGLNFNTLLSGPSRLIN 277
VTS I L K + +S +L A C +N +G + T SR++N
Sbjct: 370 VTSMQMSISSSLSPDQCAKAIELLSKALPAWCTINLLGNIQVVTF----SRIVN 419
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 249 NVLKFKPPMVFTTQDADRLVETLDRVLGEL 160
NV+ K P V T + + +ETL VLGE+
Sbjct: 327 NVVDGKIPEVSTAANPEVCLETLKAVLGEI 356
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,837,025
Number of Sequences: 5004
Number of extensions: 59336
Number of successful extensions: 183
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -