Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11l08
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    28   0.075
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          26   0.40 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      26   0.40 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.8  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   6.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.5  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   6.5  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   8.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.6  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 28.3 bits (60), Expect = 0.075
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 620 QQVAPVLNQAQIPVMVQPFTNQTFVAVPQMKTSAAQMQAATEY 492
           +Q+A V+  +++ V +Q   N     V Q+ T AA+  A T Y
Sbjct: 319 KQIASVVKSSELAVRIQRQENNIRPMVKQIDTVAAEWPATTNY 361


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = +1

Query: 46  VRHGITYLQKYFTSIV----CPSTLEPSKNLTQRSASRT 150
           ++H + YLQKYF   +       TL P  N  +R +S +
Sbjct: 528 IKHDMVYLQKYFYLFMEMDRFAVTLRPGSNSIERQSSES 566


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = +1

Query: 46  VRHGITYLQKYFTSIV----CPSTLEPSKNLTQRSASRT 150
           ++H + YLQKYF   +       TL P  N  +R +S +
Sbjct: 528 IKHDMVYLQKYFYLFMEMDRFAVTLRPGSNSIERQSSES 566


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 322 PYTHLNLTTPSNRPAWWSL 266
           P+  L L   + RPA+WSL
Sbjct: 317 PFPFLMLPLGAGRPAFWSL 335


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
 Frame = +3

Query: 39  IFCPPRHNVSSEVLHFNSLSVHFGAVKEFDTTLGVAHVEE----ADDRPTHAQHIHE 197
           I+  P  +   ++ ++  +   FG + + D  +  AH +      D  P H    HE
Sbjct: 74  IYPSPMVDFGYDISNYTDVHPIFGTISDLDNLVSAAHEKGLKIILDFVPNHTSDQHE 130


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 302 QIQMRVRTARRGRPCCL 352
           +I+++ +TARRG P  L
Sbjct: 780 EIKLKNQTARRGEPAVL 796


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
 Frame = +3

Query: 39  IFCPPRHNVSSEVLHFNSLSVHFGAVKEFDTTLGVAHVEE----ADDRPTHAQHIHE 197
           I+  P  +   ++ ++  +   FG + + D  +  AH +      D  P H    HE
Sbjct: 74  IYPSPMVDFGYDISNYTDVHPIFGTISDLDNLVSAAHEKGLKIILDFVPNHTSDQHE 130


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -1

Query: 292 SNRPAWW 272
           S+RPAWW
Sbjct: 24  SHRPAWW 30


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 38  NINGMVGCKSSI 3
           N+NG V C SSI
Sbjct: 151 NLNGTVNCTSSI 162


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,025
Number of Sequences: 438
Number of extensions: 3834
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)