Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11l05
         (485 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y16718-1|CAA76349.1|  519|Homo sapiens filensin protein.               31   2.8  
Y16717-1|CAA76348.1|  665|Homo sapiens filensin protein.               31   2.8  
BC041483-1|AAH41483.1|  540|Homo sapiens BFSP1 protein protein.        31   2.8  
AL132765-1|CAH74032.1|  540|Homo sapiens beaded filament structu...    31   2.8  
AL031664-6|CAB89430.1|  665|Homo sapiens beaded filament structu...    31   2.8  
AL031664-1|CAI21689.1|  540|Homo sapiens beaded filament structu...    31   2.8  
AF039655-1|AAB94939.1|  665|Homo sapiens filensin protein.             31   2.8  
BC059168-1|AAH59168.1|  108|Homo sapiens CDGSH iron sulfur domai...    30   3.8  
BC008474-1|AAH08474.1|  108|Homo sapiens zinc finger, CDGSH-type...    30   3.8  
BC007043-1|AAH07043.1|  108|Homo sapiens zinc finger, CDGSH-type...    30   3.8  
BC005962-1|AAH05962.1|  108|Homo sapiens zinc finger, CDGSH-type...    30   3.8  
AY960578-1|AAY32336.1|  108|Homo sapiens zinc finger CDGSH-type ...    30   3.8  
AF220049-1|AAF67642.1|  108|Homo sapiens uncharacterized hematop...    30   3.8  
BX537971-1|CAD97935.1|  150|Homo sapiens hypothetical protein pr...    29   6.6  
BC032300-1|AAH32300.1|  135|Homo sapiens CDGSH iron sulfur domai...    29   6.6  
Z35094-1|CAA84477.1|  256|Homo sapiens SURF-2 protein.                 29   8.7  
CR456753-1|CAG33034.1|  256|Homo sapiens SURF2 protein.                29   8.7  
BC014411-1|AAH14411.1|  256|Homo sapiens surfeit 2 protein.            29   8.7  
AL158826-13|CAI12838.1|  256|Homo sapiens surfeit 2 protein.           29   8.7  

>Y16718-1|CAA76349.1|  519|Homo sapiens filensin protein.
          Length = 519

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 371 PKPEVPKNPLEKVYSASQQKDNGIIYDKKPFKITLE 264
           P PE PK PLE      Q+K++G   D++P    +E
Sbjct: 366 PSPESPKPPLENGQVGLQEKEDGQPIDQQPIDKEIE 401


>Y16717-1|CAA76348.1|  665|Homo sapiens filensin protein.
          Length = 665

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 371 PKPEVPKNPLEKVYSASQQKDNGIIYDKKPFKITLE 264
           P PE PK PLE      Q+K++G   D++P    +E
Sbjct: 512 PSPESPKPPLENGQVGLQEKEDGQPIDQQPIDKEIE 547


>BC041483-1|AAH41483.1|  540|Homo sapiens BFSP1 protein protein.
          Length = 540

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 371 PKPEVPKNPLEKVYSASQQKDNGIIYDKKPFKITLE 264
           P PE PK PLE      Q+K++G   D++P    +E
Sbjct: 387 PSPESPKPPLENGQVGLQEKEDGQPIDQQPIDKEIE 422


>AL132765-1|CAH74032.1|  540|Homo sapiens beaded filament structural
           protein 1, filensin protein.
          Length = 540

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 371 PKPEVPKNPLEKVYSASQQKDNGIIYDKKPFKITLE 264
           P PE PK PLE      Q+K++G   D++P    +E
Sbjct: 387 PSPESPKPPLENGQVGLQEKEDGQPIDQQPIDKEIE 422


>AL031664-6|CAB89430.1|  665|Homo sapiens beaded filament structural
           protein 1, filensin protein.
          Length = 665

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 371 PKPEVPKNPLEKVYSASQQKDNGIIYDKKPFKITLE 264
           P PE PK PLE      Q+K++G   D++P    +E
Sbjct: 512 PSPESPKPPLENGQVGLQEKEDGQPIDQQPIDKEIE 547


>AL031664-1|CAI21689.1|  540|Homo sapiens beaded filament structural
           protein 1, filensin protein.
          Length = 540

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 371 PKPEVPKNPLEKVYSASQQKDNGIIYDKKPFKITLE 264
           P PE PK PLE      Q+K++G   D++P    +E
Sbjct: 387 PSPESPKPPLENGQVGLQEKEDGQPIDQQPIDKEIE 422


>AF039655-1|AAB94939.1|  665|Homo sapiens filensin protein.
          Length = 665

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 371 PKPEVPKNPLEKVYSASQQKDNGIIYDKKPFKITLE 264
           P PE PK PLE      Q+K++G   D++P    +E
Sbjct: 512 PSPESPKPPLENGQVGLQEKEDGQPIDQQPIDKEIE 547


>BC059168-1|AAH59168.1|  108|Homo sapiens CDGSH iron sulfur domain 1
           protein.
          Length = 108

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 245 WCLCGRSKRQPLCDGTH 195
           +C C RSK+ P CDG H
Sbjct: 71  YCRCWRSKKFPFCDGAH 87


>BC008474-1|AAH08474.1|  108|Homo sapiens zinc finger, CDGSH-type
           domain 1 protein.
          Length = 108

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 245 WCLCGRSKRQPLCDGTH 195
           +C C RSK+ P CDG H
Sbjct: 71  YCRCWRSKKFPFCDGAH 87


>BC007043-1|AAH07043.1|  108|Homo sapiens zinc finger, CDGSH-type
           domain 1 protein.
          Length = 108

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 245 WCLCGRSKRQPLCDGTH 195
           +C C RSK+ P CDG H
Sbjct: 71  YCRCWRSKKFPFCDGAH 87


>BC005962-1|AAH05962.1|  108|Homo sapiens zinc finger, CDGSH-type
           domain 1 protein.
          Length = 108

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 245 WCLCGRSKRQPLCDGTH 195
           +C C RSK+ P CDG H
Sbjct: 71  YCRCWRSKKFPFCDGAH 87


>AY960578-1|AAY32336.1|  108|Homo sapiens zinc finger CDGSH-type
           domain 1 protein.
          Length = 108

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 245 WCLCGRSKRQPLCDGTH 195
           +C C RSK+ P CDG H
Sbjct: 71  YCRCWRSKKFPFCDGAH 87


>AF220049-1|AAF67642.1|  108|Homo sapiens uncharacterized
           hematopoietic stem/progenitor cells protein MDS029
           protein.
          Length = 108

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 245 WCLCGRSKRQPLCDGTH 195
           +C C RSK+ P CDG H
Sbjct: 71  YCRCWRSKKFPFCDGAH 87


>BX537971-1|CAD97935.1|  150|Homo sapiens hypothetical protein
           protein.
          Length = 150

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = -1

Query: 368 KPEVPKNPLEK--VYSASQQKDNGIIYDKKPFKITLEAGKTYHWCLCGRSKRQPLCDGTH 195
           +P +PK   +K  + +   QK+N  + ++   +        Y  C C RSK  P CDG+H
Sbjct: 72  RPFLPKKKQQKDSLINLKIQKENPKVVNEINIEDLCLTKAAY--CRCWRSKTFPACDGSH 129


>BC032300-1|AAH32300.1|  135|Homo sapiens CDGSH iron sulfur domain 2
           protein.
          Length = 135

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = -1

Query: 368 KPEVPKNPLEK--VYSASQQKDNGIIYDKKPFKITLEAGKTYHWCLCGRSKRQPLCDGTH 195
           +P +PK   +K  + +   QK+N  + ++   +        Y  C C RSK  P CDG+H
Sbjct: 57  RPFLPKKKQQKDSLINLKIQKENPKVVNEINIEDLCLTKAAY--CRCWRSKTFPACDGSH 114


>Z35094-1|CAA84477.1|  256|Homo sapiens SURF-2 protein.
          Length = 256

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -2

Query: 88  VMAHTKTKIYKKLMLKFNFKQKQNIDYTP 2
           V+ HT+ + Y++ + K+   QKQ ++Y P
Sbjct: 97  VLRHTQGRRYQRALCKYEECQKQGVEYVP 125


>CR456753-1|CAG33034.1|  256|Homo sapiens SURF2 protein.
          Length = 256

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -2

Query: 88  VMAHTKTKIYKKLMLKFNFKQKQNIDYTP 2
           V+ HT+ + Y++ + K+   QKQ ++Y P
Sbjct: 97  VLRHTQGRRYQRALCKYEECQKQGVEYVP 125


>BC014411-1|AAH14411.1|  256|Homo sapiens surfeit 2 protein.
          Length = 256

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -2

Query: 88  VMAHTKTKIYKKLMLKFNFKQKQNIDYTP 2
           V+ HT+ + Y++ + K+   QKQ ++Y P
Sbjct: 97  VLRHTQGRRYQRALCKYEECQKQGVEYVP 125


>AL158826-13|CAI12838.1|  256|Homo sapiens surfeit 2 protein.
          Length = 256

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -2

Query: 88  VMAHTKTKIYKKLMLKFNFKQKQNIDYTP 2
           V+ HT+ + Y++ + K+   QKQ ++Y P
Sbjct: 97  VLRHTQGRRYQRALCKYEECQKQGVEYVP 125


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,846,969
Number of Sequences: 237096
Number of extensions: 1603704
Number of successful extensions: 2891
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2891
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4384610846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)