Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11l02
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ...    27   3.3  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   7.6  

>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 451

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 227 IVLNIYIFFFLAPNSTILQALAY*HSELAFLSVCSNY 337
           IVLN Y ++    N  +L ALAY  SE       +N+
Sbjct: 390 IVLNDYAYWIQTANDNVLAALAYQVSECTITKEETNW 426


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 15/66 (22%), Positives = 27/66 (40%)
 Frame = +3

Query: 321 AYALIIFLSVTIIRNQYAHSF*ALLH*QFQRCYTVYYHKRPLKNRISYXXXXXXXXXLNK 500
           A  + IF S T  ++  +     ++H  F     VYY   PL+N + +          N+
Sbjct: 429 APVVFIFASSTKEQHYASRLVVGIVHFFFSLVCVVYYSITPLRNLVGFTTKRSGKNLANR 488

Query: 501 YITFQY 518
           + T  +
Sbjct: 489 FFTANF 494


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,386,283
Number of Sequences: 5004
Number of extensions: 43965
Number of successful extensions: 92
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)