Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11k21
(625 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex det... 21 7.4
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 21 7.4
DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex det... 21 9.8
DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex det... 21 9.8
DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex det... 21 9.8
DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex det... 21 9.8
DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex det... 21 9.8
DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex det... 21 9.8
DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex det... 21 9.8
DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex det... 21 9.8
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 21 9.8
AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor typ... 21 9.8
>DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 7.4
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 103 ISNILLAFTHYNYVDKKGVSNNNHQLNK*KL 195
ISN +YNY + NNN+ N KL
Sbjct: 82 ISNNNSLSNNYNYNNNYNNYNNNYNTNYKKL 112
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 21.4 bits (43), Expect = 7.4
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -1
Query: 286 LTVFFLIIAYVFIKRATYMHLKQHYIVALLIV 191
LTVFFL++A + + + L Y++ +I+
Sbjct: 291 LTVFFLLLAEIIPPTSLAIPLLGKYLLFTMIL 322
>DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.0 bits (42), Expect = 9.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 130 HYNYVDKKGVSNNNHQLNK*KL 195
+YNY + +NNN+ N KL
Sbjct: 88 NYNYSNYNNYNNNNNYNNYKKL 109
>DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 21.0 bits (42), Expect = 9.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 130 HYNYVDKKGVSNNNHQLNK*KL 195
+YNY + +NNN+ N KL
Sbjct: 88 NYNYSNYNNYNNNNNYNNYKKL 109
>DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.0 bits (42), Expect = 9.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 130 HYNYVDKKGVSNNNHQLNK*KL 195
+YNY + +NNN+ N KL
Sbjct: 88 NYNYSNYNNYNNNNNYNNYKKL 109
>DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.0 bits (42), Expect = 9.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 130 HYNYVDKKGVSNNNHQLNK*KL 195
+YNY + +NNN+ N KL
Sbjct: 88 NYNYSNYNNYNNNNNYNNYKKL 109
>DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.0 bits (42), Expect = 9.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 130 HYNYVDKKGVSNNNHQLNK*KL 195
+YNY + +NNN+ N KL
Sbjct: 88 NYNYSNYNNYNNNNNYNNYKKL 109
>DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.0 bits (42), Expect = 9.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 130 HYNYVDKKGVSNNNHQLNK*KL 195
+YNY + +NNN+ N KL
Sbjct: 88 NYNYSNYNNYNNNNNYNNYKKL 109
>DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.0 bits (42), Expect = 9.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 130 HYNYVDKKGVSNNNHQLNK*KL 195
+YNY + +NNN+ N KL
Sbjct: 88 NYNYSNYNNYNNNNNYNNYKKL 109
>DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.0 bits (42), Expect = 9.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 130 HYNYVDKKGVSNNNHQLNK*KL 195
+YNY + +NNN+ N KL
Sbjct: 88 NYNYSNYNNYNNNNNYNNYKKL 109
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 21.0 bits (42), Expect = 9.8
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = -1
Query: 286 LTVFFLIIAYVFIKRATYMHLKQHYIVALLIV 191
LTVFFL++A + + + L Y++ +++
Sbjct: 278 LTVFFLLLAEIIPPTSLTVPLLGKYLLFTMVL 309
>AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor type
D2 protein.
Length = 456
Score = 21.0 bits (42), Expect = 9.8
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = -1
Query: 295 YNFLTVFFLIIAYVFIKRATYMHLKQHYIVALL 197
++ TVF + + + R Y+H +Y V L
Sbjct: 55 FSVATVFGNTLVILAVVRERYLHTATNYFVTSL 87
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,504
Number of Sequences: 438
Number of extensions: 3085
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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