Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11k18
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   4.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   8.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 396  VFLPAETTSNLCLSMIPRSCFLTSWARF 479
            V L A   S   L ++ R+  LT W+RF
Sbjct: 1116 VVLEAVHASRRVLIVLTRNFLLTEWSRF 1143


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -1

Query: 272 VQQTTGMGNLP*ASTDYERVHEGSHDHR 189
           ++ +T  GN+  A T + +  +G HD+R
Sbjct: 157 IKYSTNKGNIRSAITIFPQRTDGKHDYR 184



 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 556 AVYNSWRNNKFSN 518
           AVY  WR+ KF N
Sbjct: 857 AVYEDWRHWKFPN 869


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 171 SLLPPSLNSRTQQNSLNLRRTRDWN 97
           +L P     + Q+N+  L R+R W+
Sbjct: 339 TLTPKLARKQFQKNTTGLERSRSWS 363


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 342 RIPRKDIGRSWTVKLFIYILP 280
           R P+  +   W  ++FI++LP
Sbjct: 330 RSPQTHVMAPWVRRVFIHVLP 350


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 346 KKDPQEGYRTLVDSQVVYIHPSSALFNRQPEW 251
           +KD Q  +    D Q V++H  +A+  R P +
Sbjct: 260 EKDGQVLWEGFGDFQPVHVHKQTAIAFRTPTY 291


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 346 KKDPQEGYRTLVDSQVVYIHPSSALFNRQPEW 251
           +KD Q  +    D Q V++H  +A+  R P +
Sbjct: 260 EKDGQVLWEGFGDFQPVHVHKQTAIAFRTPTY 291


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,924
Number of Sequences: 438
Number of extensions: 4468
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)