Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11k17
         (732 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            25   0.56 
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   2.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.2  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   6.8  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
 Frame = -2

Query: 473 FSRGCFTVCIQYNFEFDGN*NRKA-----QYCDSLGGNLWAG 363
           FSRGC         ++D   N K      QYCD + GNL  G
Sbjct: 415 FSRGCSGFVAFNGDQYDLKKNLKVCLPPGQYCDVISGNLEKG 456


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 343 VPNTTGSIVLFGIFLMGIIVMGLYTAIIVAIFPTHLRAMAI 221
           +PN T  +VL G+F M IIV  +   +++A   T  R  ++
Sbjct: 32  LPNWT-DLVLAGLFTMLIIVTIVGNTLVIAAVITTRRLRSV 71


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/30 (23%), Positives = 18/30 (60%)
 Frame = +3

Query: 504  HGATSGLTETSNSLLRISQRVRSVFPPVSV 593
            H A S +  +++++  ++  + ++ PPV V
Sbjct: 943  HSAQSVVASSASNVTNVTTNLTTILPPVKV 972


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 13/51 (25%), Positives = 18/51 (35%)
 Frame = +2

Query: 218 GDGHSP*MCRENRNDDSCVKTHHDYPHQENSEEYNAARGIWYHVH*NPRQP 370
           G GHS      + +       HH +        Y AA  I +  H +P  P
Sbjct: 420 GHGHSHIHATPHHHHSHAATPHHQHSTPLAHSSYPAAIQIGHTPHHHPHPP 470


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -3

Query: 571 DLTLCEILNSEFEVSVNPDVAPCALNETALLMVLAVGALQCAFN 440
           DL   ++L    +V +  D+A     E   L+ L+V  L C  N
Sbjct: 156 DLNTSQLLK---QVKIPHDIAVNTTTEKGALVTLSVQLLSCEVN 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,242
Number of Sequences: 438
Number of extensions: 4109
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)