Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11j20
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.4  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   3.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   3.2  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   3.2  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              22   4.3  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   9.8  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 155 DMPYLKLGHQIPDL*E*GQLQDDALKSTQK 244
           DMP LK   Q P L +   L D+A K  +K
Sbjct: 617 DMPVLKRVLQAPPLYDTNSLMDEAYKPHKK 646



 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 127 NPRPLTMSARHAILKAWPSNS*SLRIGAA 213
           +PRP + +A   +L   PSN   L++  A
Sbjct: 841 SPRPASSTAATLVLSGCPSNMMELQVDIA 869


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 249 ISIPMCYVRYAWIYWCIH 302
           I  P+C+V +  +YW I+
Sbjct: 410 IVFPVCFVCFNLMYWIIY 427


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 249 ISIPMCYVRYAWIYWCIH 302
           I  P+C+V +  +YW I+
Sbjct: 410 IVFPVCFVCFNLMYWIIY 427


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 249 ISIPMCYVRYAWIYWCIH 302
           I  P+C+V +  +YW I+
Sbjct: 348 IVFPVCFVCFNLMYWIIY 365


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = -1

Query: 554 LLGVLTVCSVCSDAYHALCHAPQIPDRLKAWDQWECNNC 438
           LL +L  C +CS + H       + D + A      N C
Sbjct: 6   LLSLLITCLICSPSVHCGTRPSFVSDEMIATAASVVNAC 44


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 551 LGVLTVCSVCSDAYHALCH 495
           + VLT+ +   + Y A+CH
Sbjct: 127 VSVLTIVAFSMERYLAICH 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,828
Number of Sequences: 438
Number of extensions: 4150
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)