Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11j18
         (506 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   1.4  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   3.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   3.2  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   4.2  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 233 GLPKVNKVNILIKXINPIKSFQV 301
           G P V K NILI+ + P+    +
Sbjct: 59  GTPTVVKTNILIRSMGPVSELDM 81


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 160 MIFWMXLCXSSXNP 119
           ++FW+  C S+ NP
Sbjct: 46  VLFWLGYCNSAINP 59


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 160 MIFWMXLCXSSXNP 119
           ++FW+  C S+ NP
Sbjct: 494 VLFWLGYCNSAINP 507


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 221 PNK*GLPKVNKVNILIKXINPI 286
           P+K GLP +   NI +  IN I
Sbjct: 4   PSKQGLPVLVDFNIFVADINSI 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,390
Number of Sequences: 438
Number of extensions: 1291
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)