Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11j14
         (684 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D87447-1|BAA13388.2|  410|Homo sapiens KIAA0258 protein.               84   4e-16
BC001725-1|AAH01725.1|  391|Homo sapiens KIAA0258 protein protein.     84   4e-16
AL133410-11|CAI10984.1|  391|Homo sapiens KIAA0258 protein.            84   4e-16

>D87447-1|BAA13388.2|  410|Homo sapiens KIAA0258 protein.
          Length = 410

 Score = 84.2 bits (199), Expect = 4e-16
 Identities = 45/108 (41%), Positives = 59/108 (54%), Gaps = 6/108 (5%)
 Frame = -3

Query: 673 MTVARYHEVTLGLTQSQLILPIPLHITPAFEVDDVSLQWRLHFEFVTTNEK---LVP--- 512
           +T AR+ E  L  T++   LPIPL  TP F    VSL+WRLHFEFVT+ E    L+P   
Sbjct: 303 VTHARHQESCLHTTRTSFSLPIPLSSTPGFCTAIVSLKWRLHFEFVTSREPGLVLLPPVE 362

Query: 511 NPEDKDWNAPLNVPIETMVWNLPVKIYSTLPKEIMHHTVGTDAYTLNI 368
            PE   W  P  VP++T  W+LP+K+  T P    +   G    T+ I
Sbjct: 363 QPEPTTWTGPEQVPVDTFSWDLPIKVLPTSPTLASYAAPGPSTSTITI 410


>BC001725-1|AAH01725.1|  391|Homo sapiens KIAA0258 protein protein.
          Length = 391

 Score = 84.2 bits (199), Expect = 4e-16
 Identities = 45/108 (41%), Positives = 59/108 (54%), Gaps = 6/108 (5%)
 Frame = -3

Query: 673 MTVARYHEVTLGLTQSQLILPIPLHITPAFEVDDVSLQWRLHFEFVTTNEK---LVP--- 512
           +T AR+ E  L  T++   LPIPL  TP F    VSL+WRLHFEFVT+ E    L+P   
Sbjct: 284 VTHARHQESCLHTTRTSFSLPIPLSSTPGFCTAIVSLKWRLHFEFVTSREPGLVLLPPVE 343

Query: 511 NPEDKDWNAPLNVPIETMVWNLPVKIYSTLPKEIMHHTVGTDAYTLNI 368
            PE   W  P  VP++T  W+LP+K+  T P    +   G    T+ I
Sbjct: 344 QPEPTTWTGPEQVPVDTFSWDLPIKVLPTSPTLASYAAPGPSTSTITI 391


>AL133410-11|CAI10984.1|  391|Homo sapiens KIAA0258 protein.
          Length = 391

 Score = 84.2 bits (199), Expect = 4e-16
 Identities = 45/108 (41%), Positives = 59/108 (54%), Gaps = 6/108 (5%)
 Frame = -3

Query: 673 MTVARYHEVTLGLTQSQLILPIPLHITPAFEVDDVSLQWRLHFEFVTTNEK---LVP--- 512
           +T AR+ E  L  T++   LPIPL  TP F    VSL+WRLHFEFVT+ E    L+P   
Sbjct: 284 VTHARHQESCLHTTRTSFSLPIPLSSTPGFCTAIVSLKWRLHFEFVTSREPGLVLLPPVE 343

Query: 511 NPEDKDWNAPLNVPIETMVWNLPVKIYSTLPKEIMHHTVGTDAYTLNI 368
            PE   W  P  VP++T  W+LP+K+  T P    +   G    T+ I
Sbjct: 344 QPEPTTWTGPEQVPVDTFSWDLPIKVLPTSPTLASYAAPGPSTSTITI 391


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,267,459
Number of Sequences: 237096
Number of extensions: 1536372
Number of successful extensions: 2519
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2516
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)