Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11j12
(684 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK000120-1|BAA90956.1| 271|Homo sapiens protein ( Homo sapiens ... 245 1e-64
BC107701-1|AAI07702.1| 271|Homo sapiens OTU domain, ubiquitin a... 244 2e-64
BC010368-1|AAH10368.1| 271|Homo sapiens OTU domain, ubiquitin a... 244 2e-64
BC007519-1|AAH07519.1| 271|Homo sapiens OTU domain, ubiquitin a... 244 2e-64
AY177200-1|AAO27702.1| 271|Homo sapiens ubiquitin-specific prot... 244 2e-64
CR457345-1|CAG33626.1| 234|Homo sapiens C14orf137 protein. 157 3e-38
BC068058-1|AAH68058.1| 234|Homo sapiens OTU domain, ubiquitin a... 157 3e-38
AY177201-1|AAO27703.1| 234|Homo sapiens ubiquitin-specific prot... 157 3e-38
AK025569-1|BAB15172.1| 234|Homo sapiens protein ( Homo sapiens ... 157 3e-38
BC009615-1|AAH09615.1| 73|Homo sapiens OTUB2 protein protein. 43 0.001
AL391280-3|CAI41411.1| 2077|Homo sapiens dedicator of cytokinesi... 30 8.8
AL391237-2|CAI41407.1| 2077|Homo sapiens dedicator of cytokinesi... 30 8.8
>AK000120-1|BAA90956.1| 271|Homo sapiens protein ( Homo sapiens
cDNA FLJ20113 fis, clone COL05437. ).
Length = 271
Score = 245 bits (599), Expect = 1e-64
Identities = 116/198 (58%), Positives = 150/198 (75%)
Frame = -2
Query: 596 IRRTRPDGNCFFRAFSYAYLERLLTDKQEYDKFYEIAKNSKDILVALGFSQFTVEDFYET 417
IR+TRPDGNCF+RAF +++LE LL D +E +F ++ SK+ LV+ GF++FT+EDF+ T
Sbjct: 82 IRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNT 141
Query: 416 FMEVIQRVGEHAGSTPDLIETVRMELHDKFNKQGYSDYIVVYLRLITSGQLQTDQEFYQN 237
FM++I++V E S DL+ + FN Q SDY+VVYLRL+TSG LQ + +F+++
Sbjct: 142 FMDLIEQV-ERQTSVADLLAS--------FNDQSTSDYLVVYLRLLTSGYLQRESKFFEH 192
Query: 236 FIEGPRTVTEFCRQEVEPMYKESDHIHIIALSNALKVCVRVKYMDRGEGSQVIAHDFPEG 57
FIEG RTV EFC+QEVEPM KESDHIHIIAL+ AL V ++V+YMDRGEG H FPEG
Sbjct: 193 FIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEG 252
Query: 56 STPLVHLLYRPGHYDILY 3
S P V+LLYRPGHYDILY
Sbjct: 253 SEPKVYLLYRPGHYDILY 270
>BC107701-1|AAI07702.1| 271|Homo sapiens OTU domain, ubiquitin
aldehyde binding 1 protein.
Length = 271
Score = 244 bits (598), Expect = 2e-64
Identities = 116/198 (58%), Positives = 150/198 (75%)
Frame = -2
Query: 596 IRRTRPDGNCFFRAFSYAYLERLLTDKQEYDKFYEIAKNSKDILVALGFSQFTVEDFYET 417
IR+TRPDGNCF+RAF +++LE LL D +E +F ++ SK+ LV+ GF++FT+EDF+ T
Sbjct: 82 IRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNT 141
Query: 416 FMEVIQRVGEHAGSTPDLIETVRMELHDKFNKQGYSDYIVVYLRLITSGQLQTDQEFYQN 237
FM++I++V E S DL+ + FN Q SDY+VVYLRL+TSG LQ + +F+++
Sbjct: 142 FMDLIEQV-EKQTSVADLLAS--------FNDQSTSDYLVVYLRLLTSGYLQRESKFFEH 192
Query: 236 FIEGPRTVTEFCRQEVEPMYKESDHIHIIALSNALKVCVRVKYMDRGEGSQVIAHDFPEG 57
FIEG RTV EFC+QEVEPM KESDHIHIIAL+ AL V ++V+YMDRGEG H FPEG
Sbjct: 193 FIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEG 252
Query: 56 STPLVHLLYRPGHYDILY 3
S P V+LLYRPGHYDILY
Sbjct: 253 SEPKVYLLYRPGHYDILY 270
>BC010368-1|AAH10368.1| 271|Homo sapiens OTU domain, ubiquitin
aldehyde binding 1 protein.
Length = 271
Score = 244 bits (598), Expect = 2e-64
Identities = 116/198 (58%), Positives = 150/198 (75%)
Frame = -2
Query: 596 IRRTRPDGNCFFRAFSYAYLERLLTDKQEYDKFYEIAKNSKDILVALGFSQFTVEDFYET 417
IR+TRPDGNCF+RAF +++LE LL D +E +F ++ SK+ LV+ GF++FT+EDF+ T
Sbjct: 82 IRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNT 141
Query: 416 FMEVIQRVGEHAGSTPDLIETVRMELHDKFNKQGYSDYIVVYLRLITSGQLQTDQEFYQN 237
FM++I++V E S DL+ + FN Q SDY+VVYLRL+TSG LQ + +F+++
Sbjct: 142 FMDLIEQV-EKQTSVADLLAS--------FNDQSTSDYLVVYLRLLTSGYLQRESKFFEH 192
Query: 236 FIEGPRTVTEFCRQEVEPMYKESDHIHIIALSNALKVCVRVKYMDRGEGSQVIAHDFPEG 57
FIEG RTV EFC+QEVEPM KESDHIHIIAL+ AL V ++V+YMDRGEG H FPEG
Sbjct: 193 FIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEG 252
Query: 56 STPLVHLLYRPGHYDILY 3
S P V+LLYRPGHYDILY
Sbjct: 253 SEPKVYLLYRPGHYDILY 270
>BC007519-1|AAH07519.1| 271|Homo sapiens OTU domain, ubiquitin
aldehyde binding 1 protein.
Length = 271
Score = 244 bits (598), Expect = 2e-64
Identities = 116/198 (58%), Positives = 150/198 (75%)
Frame = -2
Query: 596 IRRTRPDGNCFFRAFSYAYLERLLTDKQEYDKFYEIAKNSKDILVALGFSQFTVEDFYET 417
IR+TRPDGNCF+RAF +++LE LL D +E +F ++ SK+ LV+ GF++FT+EDF+ T
Sbjct: 82 IRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNT 141
Query: 416 FMEVIQRVGEHAGSTPDLIETVRMELHDKFNKQGYSDYIVVYLRLITSGQLQTDQEFYQN 237
FM++I++V E S DL+ + FN Q SDY+VVYLRL+TSG LQ + +F+++
Sbjct: 142 FMDLIEQV-EKQTSVADLLAS--------FNDQSTSDYLVVYLRLLTSGYLQRESKFFEH 192
Query: 236 FIEGPRTVTEFCRQEVEPMYKESDHIHIIALSNALKVCVRVKYMDRGEGSQVIAHDFPEG 57
FIEG RTV EFC+QEVEPM KESDHIHIIAL+ AL V ++V+YMDRGEG H FPEG
Sbjct: 193 FIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEG 252
Query: 56 STPLVHLLYRPGHYDILY 3
S P V+LLYRPGHYDILY
Sbjct: 253 SEPKVYLLYRPGHYDILY 270
>AY177200-1|AAO27702.1| 271|Homo sapiens ubiquitin-specific
protease otubain 1 protein.
Length = 271
Score = 244 bits (598), Expect = 2e-64
Identities = 116/198 (58%), Positives = 150/198 (75%)
Frame = -2
Query: 596 IRRTRPDGNCFFRAFSYAYLERLLTDKQEYDKFYEIAKNSKDILVALGFSQFTVEDFYET 417
IR+TRPDGNCF+RAF +++LE LL D +E +F ++ SK+ LV+ GF++FT+EDF+ T
Sbjct: 82 IRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNT 141
Query: 416 FMEVIQRVGEHAGSTPDLIETVRMELHDKFNKQGYSDYIVVYLRLITSGQLQTDQEFYQN 237
FM++I++V E S DL+ + FN Q SDY+VVYLRL+TSG LQ + +F+++
Sbjct: 142 FMDLIEQV-EKQTSVADLLAS--------FNDQSTSDYLVVYLRLLTSGYLQRESKFFEH 192
Query: 236 FIEGPRTVTEFCRQEVEPMYKESDHIHIIALSNALKVCVRVKYMDRGEGSQVIAHDFPEG 57
FIEG RTV EFC+QEVEPM KESDHIHIIAL+ AL V ++V+YMDRGEG H FPEG
Sbjct: 193 FIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEG 252
Query: 56 STPLVHLLYRPGHYDILY 3
S P V+LLYRPGHYDILY
Sbjct: 253 SEPKVYLLYRPGHYDILY 270
>CR457345-1|CAG33626.1| 234|Homo sapiens C14orf137 protein.
Length = 234
Score = 157 bits (382), Expect = 3e-38
Identities = 82/198 (41%), Positives = 121/198 (61%)
Frame = -2
Query: 596 IRRTRPDGNCFFRAFSYAYLERLLTDKQEYDKFYEIAKNSKDILVALGFSQFTVEDFYET 417
IR+T+ DGNCF+RA Y+YLE LL +E KF E + + L+A GF + +F+
Sbjct: 42 IRKTKGDGNCFYRALGYSYLESLLGKSREIFKFKERVLQTPNDLLAAGFEEHKFRNFFNA 101
Query: 416 FMEVIQRVGEHAGSTPDLIETVRMELHDKFNKQGYSDYIVVYLRLITSGQLQTDQEFYQN 237
F V++ V E GS L++ FN Q SD+IV +LRL+TS ++ +F+++
Sbjct: 102 FYSVVELV-EKDGSVSSLLKV--------FNDQSASDHIVQFLRLLTSAFIRNRADFFRH 152
Query: 236 FIEGPRTVTEFCRQEVEPMYKESDHIHIIALSNALKVCVRVKYMDRGEGSQVIAHDFPEG 57
FI+ + +FC EVEPM E DHI I ALS AL + ++V+Y+D + + + H FPE
Sbjct: 153 FIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMD-TALNHHVFPEA 211
Query: 56 STPLVHLLYRPGHYDILY 3
+TP V+LLY+ HY+ILY
Sbjct: 212 ATPSVYLLYKTSHYNILY 229
>BC068058-1|AAH68058.1| 234|Homo sapiens OTU domain, ubiquitin
aldehyde binding 2 protein.
Length = 234
Score = 157 bits (382), Expect = 3e-38
Identities = 82/198 (41%), Positives = 121/198 (61%)
Frame = -2
Query: 596 IRRTRPDGNCFFRAFSYAYLERLLTDKQEYDKFYEIAKNSKDILVALGFSQFTVEDFYET 417
IR+T+ DGNCF+RA Y+YLE LL +E KF E + + L+A GF + +F+
Sbjct: 42 IRKTKGDGNCFYRALGYSYLESLLGKSREIFKFKERVLQTPNDLLAAGFEEHKFRNFFNA 101
Query: 416 FMEVIQRVGEHAGSTPDLIETVRMELHDKFNKQGYSDYIVVYLRLITSGQLQTDQEFYQN 237
F V++ V E GS L++ FN Q SD+IV +LRL+TS ++ +F+++
Sbjct: 102 FYSVVELV-EKDGSVSSLLKV--------FNDQSASDHIVQFLRLLTSAFIRNRADFFRH 152
Query: 236 FIEGPRTVTEFCRQEVEPMYKESDHIHIIALSNALKVCVRVKYMDRGEGSQVIAHDFPEG 57
FI+ + +FC EVEPM E DHI I ALS AL + ++V+Y+D + + + H FPE
Sbjct: 153 FIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMD-TALNHHVFPEA 211
Query: 56 STPLVHLLYRPGHYDILY 3
+TP V+LLY+ HY+ILY
Sbjct: 212 ATPSVYLLYKTSHYNILY 229
>AY177201-1|AAO27703.1| 234|Homo sapiens ubiquitin-specific
protease otubain 2 protein.
Length = 234
Score = 157 bits (382), Expect = 3e-38
Identities = 82/198 (41%), Positives = 121/198 (61%)
Frame = -2
Query: 596 IRRTRPDGNCFFRAFSYAYLERLLTDKQEYDKFYEIAKNSKDILVALGFSQFTVEDFYET 417
IR+T+ DGNCF+RA Y+YLE LL +E KF E + + L+A GF + +F+
Sbjct: 42 IRKTKGDGNCFYRALGYSYLESLLGKSREIFKFKERVLQTPNDLLAAGFEEHKFRNFFNA 101
Query: 416 FMEVIQRVGEHAGSTPDLIETVRMELHDKFNKQGYSDYIVVYLRLITSGQLQTDQEFYQN 237
F V++ V E GS L++ FN Q SD+IV +LRL+TS ++ +F+++
Sbjct: 102 FYSVVELV-EKDGSVSSLLKV--------FNDQSASDHIVQFLRLLTSAFIRNRADFFRH 152
Query: 236 FIEGPRTVTEFCRQEVEPMYKESDHIHIIALSNALKVCVRVKYMDRGEGSQVIAHDFPEG 57
FI+ + +FC EVEPM E DHI I ALS AL + ++V+Y+D + + + H FPE
Sbjct: 153 FIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMD-TALNHHVFPEA 211
Query: 56 STPLVHLLYRPGHYDILY 3
+TP V+LLY+ HY+ILY
Sbjct: 212 ATPSVYLLYKTSHYNILY 229
>AK025569-1|BAB15172.1| 234|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21916 fis, clone HEP03994. ).
Length = 234
Score = 157 bits (382), Expect = 3e-38
Identities = 82/198 (41%), Positives = 121/198 (61%)
Frame = -2
Query: 596 IRRTRPDGNCFFRAFSYAYLERLLTDKQEYDKFYEIAKNSKDILVALGFSQFTVEDFYET 417
IR+T+ DGNCF+RA Y+YLE LL +E KF E + + L+A GF + +F+
Sbjct: 42 IRKTKGDGNCFYRALGYSYLESLLGKSREIFKFKERVLQTPNDLLAAGFEEHKFRNFFNA 101
Query: 416 FMEVIQRVGEHAGSTPDLIETVRMELHDKFNKQGYSDYIVVYLRLITSGQLQTDQEFYQN 237
F V++ V E GS L++ FN Q SD+IV +LRL+TS ++ +F+++
Sbjct: 102 FYSVVELV-EKDGSVSSLLKV--------FNDQSASDHIVQFLRLLTSAFIRNRADFFRH 152
Query: 236 FIEGPRTVTEFCRQEVEPMYKESDHIHIIALSNALKVCVRVKYMDRGEGSQVIAHDFPEG 57
FI+ + +FC EVEPM E DHI I ALS AL + ++V+Y+D + + + H FPE
Sbjct: 153 FIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMD-TALNHHVFPEA 211
Query: 56 STPLVHLLYRPGHYDILY 3
+TP V+LLY+ HY+ILY
Sbjct: 212 ATPSVYLLYKTSHYNILY 229
>BC009615-1|AAH09615.1| 73|Homo sapiens OTUB2 protein protein.
Length = 73
Score = 42.7 bits (96), Expect = 0.001
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = -2
Query: 596 IRRTRPDGNCFFRAFSYAYLERLLTDKQEYDK 501
IR+T+ DGNCF+RA Y+YLE LL +E K
Sbjct: 42 IRKTKGDGNCFYRALGYSYLESLLGKSREIFK 73
>AL391280-3|CAI41411.1| 2077|Homo sapiens dedicator of cytokinesis 11
protein.
Length = 2077
Score = 29.9 bits (64), Expect = 8.8
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Frame = -2
Query: 344 ELHDKFNK--QGYSDYIVVYLRLITSGQLQTDQEFYQNFIEGPRTVTEFCRQEVEPMYKE 171
EL D F K Q S + + RLI Q++ + NF + + +++ ++ +
Sbjct: 1982 ELKDMFRKFIQACSIALELNERLIKEDQVEYHEGLKSNFRDMVKELSDIIHEQASIRILQ 2041
Query: 170 SDHIHIIALSNALKVCVRVK--YMDRGEGS 87
D +H +SN L V + DRG GS
Sbjct: 2042 EDTMHSPWMSNTLHVFCAISGTSSDRGYGS 2071
>AL391237-2|CAI41407.1| 2077|Homo sapiens dedicator of cytokinesis 11
protein.
Length = 2077
Score = 29.9 bits (64), Expect = 8.8
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Frame = -2
Query: 344 ELHDKFNK--QGYSDYIVVYLRLITSGQLQTDQEFYQNFIEGPRTVTEFCRQEVEPMYKE 171
EL D F K Q S + + RLI Q++ + NF + + +++ ++ +
Sbjct: 1982 ELKDMFRKFIQACSIALELNERLIKEDQVEYHEGLKSNFRDMVKELSDIIHEQASIRILQ 2041
Query: 170 SDHIHIIALSNALKVCVRVK--YMDRGEGS 87
D +H +SN L V + DRG GS
Sbjct: 2042 EDTMHSPWMSNTLHVFCAISGTSSDRGYGS 2071
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,161,729
Number of Sequences: 237096
Number of extensions: 2316166
Number of successful extensions: 4743
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4730
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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