Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11j12
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          24   1.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      24   1.6  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   2.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.6  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    22   4.7  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    22   4.7  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    22   4.7  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   8.3  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -2

Query: 590 RTRPDGNCFFRAFSYAYLERLLTDKQEYDKFYEIAKN 480
           R R +   F  AFS A L R  T   ++   YEI  N
Sbjct: 132 RLRMNSGMFTTAFSIAVLYRPDTKYMKFPAIYEIYPN 168


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -2

Query: 590 RTRPDGNCFFRAFSYAYLERLLTDKQEYDKFYEIAKN 480
           R R +   F  AFS A L R  T   ++   YEI  N
Sbjct: 132 RLRMNSGMFTTAFSIAVLYRPDTKYMKFPAIYEIYPN 168


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 161 IHIIALSNALKVCVRVKYMDRGEGS 87
           IH   L+N+LKV    KY+D   GS
Sbjct: 20  IHSRNLTNSLKVIYEWKYIDYDFGS 44


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 14/57 (24%), Positives = 23/57 (40%)
 Frame = +3

Query: 267 LARCNKTKVHHYVIRISLLVELIMKLHTNCFYQIRSRTSMFPYSLDYFHKSFVKIFN 437
           LAR     VH   + +  +V        N  Y IR  +++    +  F   FVK+ +
Sbjct: 82  LARSPAGSVHSRDVNVRAVVAQYYDTDVNKEYAIRGNSAILKCVVPSFVADFVKVLS 138


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 434  EDFYETFMEVIQRVGEHAGSTPDLIETVRMELHDK 330
            ED Y+T   +IQ  GE    T   +E   + L D+
Sbjct: 1079 EDVYQTLKHIIQTHGE---MTDKQVEAYMLSLRDE 1110


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 506 DKFYEIAKNSKDIL 465
           DKFY+  KNS D +
Sbjct: 93  DKFYDCLKNSADTI 106


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 506 DKFYEIAKNSKDIL 465
           DKFY+  KNS D +
Sbjct: 98  DKFYDCLKNSADTI 111


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 506 DKFYEIAKNSKDIL 465
           DKFY+  KNS D +
Sbjct: 98  DKFYDCLKNSADTI 111


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
            protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 303  HSGVPSSYYIWPAADRPRILSEFY 232
            H+G   S Y  P   + +I+SE+Y
Sbjct: 930  HAGGWQSIYAQPQTVQDQIVSEYY 953


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,115
Number of Sequences: 438
Number of extensions: 4651
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)