Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11j10
         (257 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               21   1.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   2.4  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    20   5.6  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    20   5.6  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              19   7.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    19   9.8  

>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 21.4 bits (43), Expect = 1.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 122 NIDCFHSCALTKS 84
           N  CF +CAL KS
Sbjct: 74  NYSCFITCALEKS 86


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 2.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 77  NLKISSTHRNENNQY 121
           +L ISSTH N+   Y
Sbjct: 455 HLNISSTHTNDGGLY 469


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 19.8 bits (39), Expect = 5.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 2   FVPNFILKYRYP*IIQ 49
           FVP F++ Y Y  IIQ
Sbjct: 226 FVPLFLIIYSYWFIIQ 241


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 19.8 bits (39), Expect = 5.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 2   FVPNFILKYRYP*IIQ 49
           FVP F++ Y Y  IIQ
Sbjct: 102 FVPLFLIIYSYWFIIQ 117


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 19.4 bits (38), Expect = 7.4
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 219 NARVFESCSSVDN 181
           N R FE C  +DN
Sbjct: 7   NGRDFEYCPDLDN 19


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -3

Query: 255 VHCIPSVARVEVNARVFES 199
           V C+PSV  V   A  F S
Sbjct: 157 VSCVPSVKHVAKCATDFSS 175


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,330
Number of Sequences: 438
Number of extensions: 781
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4636803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)