Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11j05
(791 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ606308-1|CAE54436.1| 4262|Homo sapiens secreted mucin MUC17 pr... 33 1.6
AJ606307-1|CAE54435.1| 4493|Homo sapiens membrane mucin MUC17 pr... 33 1.6
AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related ... 31 4.8
AF361486-1|AAK74120.3| 6995|Homo sapiens mucin 16 protein. 31 4.8
AF007191-1|AAC02269.1| 589|Homo sapiens intestinal mucin protein. 31 6.3
X74955-1|CAA52910.1| 622|Homo sapiens mucin protein. 30 8.3
BC126315-1|AAI26316.1| 1224|Homo sapiens MUC17 protein protein. 30 8.3
AY113189-1|AAM77920.1| 755|Homo sapiens OCT-1 protein protein. 30 8.3
AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein. 30 8.3
>AJ606308-1|CAE54436.1| 4262|Homo sapiens secreted mucin MUC17
protein.
Length = 4262
Score = 32.7 bits (71), Expect = 1.6
Identities = 26/83 (31%), Positives = 44/83 (53%)
Frame = +2
Query: 377 NASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTA 556
+ + L TS + ++ S TTT G + + P++ S L+TS+ PV SIT T+
Sbjct: 768 STTPLDTSTHITTSTEASCSPTTTEGTSMPISTPSEGSPLLTSI---PV--SITP-VTSP 821
Query: 557 GAATIVLEPTDTSSLITFGSTCS 625
A+T+ P D++S +T + S
Sbjct: 822 EASTLSTTPVDSNSPVTTSTEVS 844
Score = 31.9 bits (69), Expect = 2.7
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Frame = +2
Query: 380 ASSLITSVALAPVEDSIGSFTTTAGAAT-IVLEPTDTSSLITSVALAPVEDSITSFTTTA 556
ASS ++++ PV+ SI T+T G+++ E T S P+ + S A
Sbjct: 2882 ASSEASTLSTTPVDTSIPVTTSTEGSSSPTTAEGTSMPISTPSEVSTPLTSILVSTVPVA 2941
Query: 557 G--AATIVLEPTDTSSLITFGSTCS 625
G A+T+ P DT + +T + S
Sbjct: 2942 GSEASTLSTTPVDTRTPVTTSAEAS 2966
Score = 30.3 bits (65), Expect = 8.3
Identities = 31/145 (21%), Positives = 51/145 (35%), Gaps = 7/145 (4%)
Frame = -3
Query: 606 VINDEVSVGSKTIV--AAPAVVVNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVND 433
V++ E S S T V + P + S T A T + S G+ + + P V
Sbjct: 3352 VVSSEASTLSTTPVDTSTPVTTSTEASLSPTTAEGTSIPTSSPSEGTTPLASMP-VSTTP 3410
Query: 432 PIESSTGASATEVINDEALVSSKXXXXXXXXXXXXXXXXXVLNTEAP-----QDLSTKIL 268
+ S +T ++ LV++ +E LST +
Sbjct: 3411 VVSSEVNTLSTTPVDSNTLVTTSTEASSSPTIAEGTSLPTSTTSEGSTPLSIMPLSTTPV 3470
Query: 267 ADAVPEAVIVTAPEAETAITTGSPT 193
A + + T + T +TT SPT
Sbjct: 3471 ASSEASTLSTTPVDTSTPVTTSSPT 3495
>AJ606307-1|CAE54435.1| 4493|Homo sapiens membrane mucin MUC17
protein.
Length = 4493
Score = 32.7 bits (71), Expect = 1.6
Identities = 26/83 (31%), Positives = 44/83 (53%)
Frame = +2
Query: 377 NASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTA 556
+ + L TS + ++ S TTT G + + P++ S L+TS+ PV SIT T+
Sbjct: 768 STTPLDTSTHITTSTEASCSPTTTEGTSMPISTPSEGSPLLTSI---PV--SITP-VTSP 821
Query: 557 GAATIVLEPTDTSSLITFGSTCS 625
A+T+ P D++S +T + S
Sbjct: 822 EASTLSTTPVDSNSPVTTSTEVS 844
Score = 31.9 bits (69), Expect = 2.7
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Frame = +2
Query: 380 ASSLITSVALAPVEDSIGSFTTTAGAAT-IVLEPTDTSSLITSVALAPVEDSITSFTTTA 556
ASS ++++ PV+ SI T+T G+++ E T S P+ + S A
Sbjct: 2882 ASSEASTLSTTPVDTSIPVTTSTEGSSSPTTAEGTSMPISTPSEVSTPLTSILVSTVPVA 2941
Query: 557 G--AATIVLEPTDTSSLITFGSTCS 625
G A+T+ P DT + +T + S
Sbjct: 2942 GSEASTLSTTPVDTRTPVTTSAEAS 2966
Score = 30.3 bits (65), Expect = 8.3
Identities = 31/145 (21%), Positives = 51/145 (35%), Gaps = 7/145 (4%)
Frame = -3
Query: 606 VINDEVSVGSKTIV--AAPAVVVNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVND 433
V++ E S S T V + P + S T A T + S G+ + + P V
Sbjct: 3352 VVSSEASTLSTTPVDTSTPVTTSTEASLSPTTAEGTSIPTSSPSEGTTPLASMP-VSTTP 3410
Query: 432 PIESSTGASATEVINDEALVSSKXXXXXXXXXXXXXXXXXVLNTEAP-----QDLSTKIL 268
+ S +T ++ LV++ +E LST +
Sbjct: 3411 VVSSEVNTLSTTPVDSNTLVTTSTEASSSPTIAEGTSLPTSTTSEGSTPLSIMPLSTTPV 3470
Query: 267 ADAVPEAVIVTAPEAETAITTGSPT 193
A + + T + T +TT SPT
Sbjct: 3471 ASSEASTLSTTPVDTSTPVTTSSPT 3495
>AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related tumor
marker CA125 protein.
Length = 22152
Score = 31.1 bits (67), Expect = 4.8
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +2
Query: 413 PVEDSIGSFTTTAGAATIVLEP---TDTSSLITSVALAPVEDSITSFTTTAGAATIVLEP 583
PV + SF+ ++ AT V+ T+ SS + + + +TS T++GAAT P
Sbjct: 11702 PVSRTTSSFSHSSPDATPVMATSPRTEASSAVLTTISPGAPEMVTSQITSSGAATSTTVP 11761
Query: 584 TDTSS 598
T T S
Sbjct: 11762 TLTHS 11766
>AF361486-1|AAK74120.3| 6995|Homo sapiens mucin 16 protein.
Length = 6995
Score = 31.1 bits (67), Expect = 4.8
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +2
Query: 413 PVEDSIGSFTTTAGAATIVLEP---TDTSSLITSVALAPVEDSITSFTTTAGAATIVLEP 583
PV + SF+ ++ AT V+ T+ SS + + + +TS T++GAAT P
Sbjct: 3406 PVSRTTSSFSHSSPDATPVMATSPRTEASSAVLTTISPGAPEMVTSQITSSGAATSTTVP 3465
Query: 584 TDTSS 598
T T S
Sbjct: 3466 TLTHS 3470
>AF007191-1|AAC02269.1| 589|Homo sapiens intestinal mucin protein.
Length = 589
Score = 30.7 bits (66), Expect = 6.3
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Frame = +2
Query: 374 TNASSLITSVALA-PVEDSIGSFTTTAGAATIVLEPTD--TSSLITSV-ALAPVEDSITS 541
T L T VA V+ ++ S T T T + TD T SL+T++ + + +ITS
Sbjct: 327 TTMEPLSTIVATTGTVKTTVTSSTATFRETTTLTSTTDISTESLMTAMTSTTRLTSAITS 386
Query: 542 FTTTAGAATIVLEPTDTSSLITFGST 619
TT T PT S+L + S+
Sbjct: 387 KTTLTSLKTTASRPTANSTLSSLTSS 412
>X74955-1|CAA52910.1| 622|Homo sapiens mucin protein.
Length = 622
Score = 30.3 bits (65), Expect = 8.3
Identities = 19/79 (24%), Positives = 32/79 (40%)
Frame = +2
Query: 383 SSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGA 562
+ L T+ S + ++T G I+ EP+ T+++ S + T
Sbjct: 253 TELTTTATTTASTGSTATLSSTPGTTWILTEPSTTATVTVPTGSTATASSTQATAGTPHV 312
Query: 563 ATIVLEPTDTSSLITFGST 619
+T PT TSS T S+
Sbjct: 313 STTATTPTVTSSKATPSSS 331
>BC126315-1|AAI26316.1| 1224|Homo sapiens MUC17 protein protein.
Length = 1224
Score = 30.3 bits (65), Expect = 8.3
Identities = 31/145 (21%), Positives = 51/145 (35%), Gaps = 7/145 (4%)
Frame = -3
Query: 606 VINDEVSVGSKTIV--AAPAVVVNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVND 433
V++ E S S T V + P + S T A T + S G+ + + P V
Sbjct: 83 VVSSEASTLSTTPVDTSTPVTTSTEASLSPTTAEGTSIPTSSPSEGTTPLASMP-VSTTP 141
Query: 432 PIESSTGASATEVINDEALVSSKXXXXXXXXXXXXXXXXXVLNTEAP-----QDLSTKIL 268
+ S +T ++ LV++ +E LST +
Sbjct: 142 VVSSEVNTLSTTPVDSNTLVTTSTEASSSPTIAEGTSLPTSTTSEGSTPLSIMPLSTTPV 201
Query: 267 ADAVPEAVIVTAPEAETAITTGSPT 193
A + + T + T +TT SPT
Sbjct: 202 ASSEASTLSTTPVDTSTPVTTSSPT 226
>AY113189-1|AAM77920.1| 755|Homo sapiens OCT-1 protein protein.
Length = 755
Score = 30.3 bits (65), Expect = 8.3
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +2
Query: 392 ITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGAA-T 568
+TS A+ + + S TT+ AT++ SS +TS +L+P + S + + A+ T
Sbjct: 496 LTSAAVTNLSVTGTSDTTSNNTATVISTAPPASSAVTSPSLSPSPSASASTSEASSASET 555
Query: 569 IVLEPTDT 592
++ T T
Sbjct: 556 STIQTTST 563
>AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.
Length = 1349
Score = 30.3 bits (65), Expect = 8.3
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Frame = +2
Query: 374 TNASSLITSVALAPVEDSIGS---FTTTAGAATIVLEPTDTSSLITSVALAPVEDSITS- 541
+ S+ TS AP +I + TT+A A+ PT TSS T+ + S TS
Sbjct: 703 STTSAPTTSTISAPTTSTISAPTTSTTSAPTASTTSAPTSTSSAPTTNTTSAPTTSTTSA 762
Query: 542 -FTTTAGAATIVLEPTDTSSLITFGST 619
T+T A T T +S I+ +T
Sbjct: 763 PITSTISAPTTSTTSTPQTSTISSPTT 789
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,845,574
Number of Sequences: 237096
Number of extensions: 1559527
Number of successful extensions: 3342
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3323
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9701808132
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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