Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11j02
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    31   0.19 
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    27   3.1  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    25   7.2  
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    25   7.2  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   9.5  
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    25   9.5  

>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 589 PELENSIVKLFIEACDSLTVVKDGFN 512
           P L++ IVK+  +ACD ++ + D FN
Sbjct: 654 PSLKDPIVKMIFKACDQVSALLDNFN 679


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 580 ENSIVKLFIEACDSLTVVKDGFNVLIHKDLWANNIM 473
           E  I+K+  + CD++  +      LIH+DL   N++
Sbjct: 159 EGEILKILADVCDAVAAMHYLDPPLIHRDLKIENVL 194


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +3

Query: 429 SMITALLGLQSSYLNMMLLAHK 494
           S+IT LLG++SS  ++ L +HK
Sbjct: 605 SVITILLGIESSPASVKLTSHK 626


>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 298 HLNENTKLRLKRIGYNWEEFLKSCENSRMFGIFQALGI 185
           H    + +  +RIG   ++ LK C  +R   I  +LG+
Sbjct: 221 HERLRSSISRERIGVEVDKMLKHCNTNRALKIIHSLGM 258


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -2

Query: 307 FSKHLNENTKLRLKRIGYNWEEFLKSCENSRMFG---IFQALGICPYI 173
           F+KHL +  K+RL  I  N E F       R+ G   ++    + PY+
Sbjct: 555 FNKHLAQADKIRLLFIAINDENFAVRESALRIIGRLNVYNPAYVMPYL 602


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +1

Query: 562 ILQYYFLILASQRILR-RKCLRMSEI 636
           I+ YY LIL   RI+R R+ +R+ +I
Sbjct: 42  IISYYLLILVGGRIMRNRQPIRLQKI 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,701,506
Number of Sequences: 5004
Number of extensions: 56307
Number of successful extensions: 196
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)